Construct: ORF TRCN0000469598
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013876.1_s317c1
- Derived from:
- ccsbBroadEn_05961
- DNA Barcode:
- CAGGCTGCAAACGTATGCACATCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD36 (948)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469598
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 948 | CD36 | CD36 molecule | NM_000072.3 | 99.9% | 100% | 573G>A |
| 2 | human | 948 | CD36 | CD36 molecule | NM_001001547.3 | 99.9% | 100% | 573G>A |
| 3 | human | 948 | CD36 | CD36 molecule | NM_001001548.2 | 99.9% | 100% | 573G>A |
| 4 | human | 948 | CD36 | CD36 molecule | NM_001127443.1 | 99.9% | 100% | 573G>A |
| 5 | human | 948 | CD36 | CD36 molecule | NM_001127444.2 | 99.9% | 100% | 573G>A |
| 6 | human | 948 | CD36 | CD36 molecule | NM_001371074.1 | 99.9% | 100% | 573G>A |
| 7 | human | 948 | CD36 | CD36 molecule | NM_001371075.1 | 99.9% | 100% | 573G>A |
| 8 | human | 948 | CD36 | CD36 molecule | NM_001371077.1 | 99.9% | 100% | 573G>A |
| 9 | human | 948 | CD36 | CD36 molecule | NM_001371078.1 | 99.9% | 100% | 573G>A |
| 10 | human | 948 | CD36 | CD36 molecule | XM_005250715.5 | 99.9% | 100% | 573G>A |
| 11 | human | 948 | CD36 | CD36 molecule | XM_024447002.1 | 99.9% | 100% | 573G>A |
| 12 | human | 948 | CD36 | CD36 molecule | XM_024447003.1 | 99.9% | 100% | 573G>A |
| 13 | human | 948 | CD36 | CD36 molecule | NM_001371079.1 | 92.7% | 92.7% | 118_119ins102;471G>A |
| 14 | human | 948 | CD36 | CD36 molecule | NM_001289908.1 | 91.6% | 91.7% | 573G>A;699_700ins117 |
| 15 | human | 948 | CD36 | CD36 molecule | NM_001289909.1 | 87.2% | 87.2% | 429_430ins180 |
| 16 | human | 948 | CD36 | CD36 molecule | NM_001289911.2 | 83.8% | 83.8% | 0_1ins228;345G>A |
| 17 | human | 948 | CD36 | CD36 molecule | NM_001371080.1 | 67% | 67.1% | 0_1ins465;108G>A |
| 18 | human | 948 | CD36 | CD36 molecule | NM_001371081.1 | 67% | 67.1% | 0_1ins465;108G>A |
| 19 | human | 948 | CD36 | CD36 molecule | NR_110501.1 | 65.5% | (many diffs) | |
| 20 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159555.1 | 83.8% | 84.1% | (many diffs) |
| 21 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159556.1 | 83.8% | 84.1% | (many diffs) |
| 22 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159557.1 | 83.8% | 84.1% | (many diffs) |
| 23 | mouse | 12491 | Cd36 | CD36 antigen | NM_001159558.1 | 83.8% | 84.1% | (many diffs) |
| 24 | mouse | 12491 | Cd36 | CD36 antigen | NM_007643.4 | 83.8% | 84.1% | (many diffs) |
| 25 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535620.3 | 83.8% | 84.1% | (many diffs) |
| 26 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535621.3 | 83.8% | 84.1% | (many diffs) |
| 27 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535622.3 | 83.8% | 84.1% | (many diffs) |
| 28 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535623.3 | 83.8% | 84.1% | (many diffs) |
| 29 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535624.3 | 83.8% | 84.1% | (many diffs) |
| 30 | mouse | 12491 | Cd36 | CD36 antigen | XM_006535625.1 | 83.8% | 84.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1482
- ORF length:
- 1416
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg ctgtgaccgg aactgtgggc tcatcgctgg ggctgtcatt ggtgctgtcc 121 tggctgtgtt tggaggtatt ctaatgccag ttggagacct gcttatccag aagacaatta 181 aaaagcaagt tgtcctcgaa gaaggtacaa ttgcttttaa aaattgggtt aaaacaggca 241 cagaagttta cagacagttt tggatctttg atgtgcaaaa tccacaggaa gtgatgatga 301 acagcagcaa cattcaagtt aagcaaagag gtccttatac gtacagagtt cgttttctag 361 ccaaggaaaa tgtaacccag gacgctgagg acaacacagt ctctttcctg cagcccaatg 421 gtgccatctt cgaaccttca ctatcagttg gaacagaggc tgacaacttc acagttctca 481 atctggctgt ggcagctgca tcccatatct atcaaaatca atttgttcaa atgatcctca 541 attcacttat taacaagtca aaatcttcta tgttccaagt cagaactttg agagaactgt 601 tatggggcta tagggatcca tttttgagtt tggttccata ccctgttact accacagttg 661 gtctgtttta tccttacaac aatactgcag atggagttta taaagttttc aatggaaaag 721 ataacataag taaagttgcc ataatcgaca catataaagg taaaaggaat ctgtcctatt 781 gggaaagtca ctgcgacatg attaatggta cagatgcagc ctcatttcca ccttttgttg 841 agaaaagcca ggtattgcag ttcttttctt ctgatatttg caggtcaatc tatgctgtat 901 ttgaatccga cgttaatctg aaaggaatcc ctgtgtatag atttgttctt ccatccaagg 961 cctttgcctc tccagttgaa aacccagaca actattgttt ctgcacagaa aaaattatct 1021 caaaaaattg tacatcatat ggtgtgctag acatcagcaa atgcaaagaa gggagacctg 1081 tgtacatttc acttcctcat tttctgtatg caagtcctga tgtttcagaa cctattgatg 1141 gattaaaccc aaatgaagaa gaacatagga catacttgga tattgaacct ataactGGAT 1201 TCACTTTACA ATTTGCAAAA CGGCTGCAGG TCAACCTATT GGTCAAGCCA TCAGAAAAAA 1261 TTCAAGTATT AAAGAATCTG AAGAGGAACT ATATTGTGCC TATTCTTTGG CTTAATGAGA 1321 CTGGGACCAT TGGTGATGAG AAGGCAAACA TGTTCAGAAG TCAAGTAACT GGAAAAATAA 1381 ACCTCCTTGG CCTGATAGAA ATGATCTTAC TCAGTGTTGG TGTGGTGATG TTTGTTGCTT 1441 TTATGATTTC ATATTGTGCA TGCAGATCGA AAACAATAAA ATACCCAACT TTCTTGTACA 1501 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1561 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1621 AGGACGACAG GCTGCAAACG TATGCACATC TACGCGTTAA GTCgacaatc aacctctgga 1681 ttacaaaatt tgtgaaagat t