Construct: ORF TRCN0000469615
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010491.1_s317c1
- Derived from:
- BRDN0000396032
- DNA Barcode:
- ACATTTTGACAGATCCACTTGCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WRNIP1 (56897)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469615
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56897 | WRNIP1 | WRN helicase interacting pr... | NM_130395.3 | 99.6% | 99.6% | (many diffs) |
| 2 | human | 56897 | WRNIP1 | WRN helicase interacting pr... | NM_020135.3 | 95.8% | 95.9% | (many diffs) |
| 3 | human | 56897 | WRNIP1 | WRN helicase interacting pr... | XM_017011060.1 | 60% | 59.3% | (many diffs) |
| 4 | human | 56897 | WRNIP1 | WRN helicase interacting pr... | XM_005249232.3 | 58.9% | 59% | (many diffs) |
| 5 | mouse | 78903 | Wrnip1 | Werner helicase interacting... | NM_030215.3 | 85.4% | 91.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1986
- ORF length:
- 1920
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga ggtgagcggg ccggtggacg accccttcct ttcgcagctg caccaggtgc 121 agtgccccgt gtgccagcag atgatgcccg ccgcgcacat caactcgcac ctggaccgct 181 gtctgctgct ccacccggcg gggcacgcgg agcccgcggc cgggtcgcac cgcgccgggg 241 agcgggccaa ggggccctcg ccgcccggcg ccaagaggcg gcggctgtcg gagagctcgg 301 cgctgaagca gccagccacc ccgacggcag ccgagagcag tgagggcgag ggcgaggagg 361 gcgacgacgg cggcgagacc gagagccgcg agagctacga cgcgccgccc acacccagcg 421 gcgcccgcct tatccccgac ttcccggtgg cccgctccag cagccccggg aggaaggggt 481 cggggaagag gccggcggcc gccgccgcgg cggggagcgc gtctccgcgc agctgggacg 541 aggcggaggc gcaggaggag gaggaggccg tgggcgacgg cgatggcgac ggggacgcgg 601 acgcggacgg cgaggacgac ccggggcact gggacgcgga cgctgccgaa gccgccaccg 661 ccttcggggc cagcggcggg ggccgcccgc acccccgggc gctggctgcc gaggagatcc 721 gacagatgct acagggcaag ccgctggccg acacgatgcg tcctgacacg ctgcaggatt 781 acttcgggca gagcaaggcc gtgggccagg ataccctgct gcgctcgctc ctggagacca 841 acgaaatccc ctcgcttatc ctgtgggggc cgccgggctg cggcaagacc actctggctc 901 acatcatagc cagcaacagc aagaaacata gcataaggtt tgtgacatta tctgcaacaa 961 atgccaagac aaatgatgtg cgagatgtca taaaacaagc tcaaaatgaa aagagctttt 1021 tcaaaaggaa aaccatcctt tttattgatg agattcatcg gttcaataaa tctcagcagg 1081 tcaacgctgc tcttctgagc cgctgtcgag tgattgttct tgagaagctt ccagtagagg 1141 caatggtgac tattttaatg cgagcgatca actccctggg aatccacgtc ctagactcta 1201 gccgtcccac tgaccctctg agccacagca gcaacagcag ctcagagccc gccatgttca 1261 tagaggataa agcagtagac accctggctt acctcagtga cggtgacgcc cgagctgggt 1321 tgaacggact gcagctggcg gtgctggcta ggttaagctc taggaagatg ttctgtaaga 1381 agagtgggca atcctattct cccagtagag ttctgatcac agagaatgac gtgaaggagg 1441 gcctacagcg atcccacatt ttatatgagc gggccggtga ggagcattac aactgcatct 1501 ccgccctgca caagtccatg cggggctcag accagaacgc ctccctctac tggctggctc 1561 gcatgctcga gggaggagag gacccactct acgtggcacg gaggcttgtc aggtttgcca 1621 gcgaggacat aggtctggca gacccgtctg cgttaacaca agcggttgct gccTACCAAG 1681 GCTGTCATTT TATAGGCATG CCTGAATGTG AGGTGCTTCT GGCCCAGTGT GTGGTCTACT 1741 TTGCCAGAGC CCCAAAGTCC ATTGAGGTGT ACAGCGCCTA CAACAACGTC AAAGCCTGCC 1801 TGAGGAACCA CCAGGGGCCA CTGCCCCCCG TGCCCCTGCA CCTGAGGAAC GCGCCCACTA 1861 GGCTGATGAA GGATTTGGGC TATGGCAAAG GCTACAAGTA CAACCCCATG TACAGCGAGC 1921 CTGTGGATCA GGAGTACCTG CCTGAAGAGT TGAGGGGGGT AGATTTCTTC AAGCAGAGGA 1981 GGTGCTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 2041 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 2101 CTTGGCTTTA TATATCTTGT GGAAAGGACG AACATTTTGA CAGATCCACT TGCCTACGCG 2161 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt