Construct: ORF TRCN0000469632

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003818.1_s317c1
Derived from:
ccsbBroadEn_03807
DNA Barcode:
CGTATGCCGATTTTCACCGCCAAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF248 (57209)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469632
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57209 ZNF248 zinc finger protein 248 NM_001267597.1 100% 100%
2 human 57209 ZNF248 zinc finger protein 248 NM_001352469.1 100% 100%
3 human 57209 ZNF248 zinc finger protein 248 NM_001352470.1 100% 100%
4 human 57209 ZNF248 zinc finger protein 248 NM_001352471.1 100% 100%
5 human 57209 ZNF248 zinc finger protein 248 NM_001352472.1 100% 100%
6 human 57209 ZNF248 zinc finger protein 248 NM_001352473.1 100% 100%
7 human 57209 ZNF248 zinc finger protein 248 NM_001352474.1 100% 100%
8 human 57209 ZNF248 zinc finger protein 248 NM_021045.2 100% 100%
9 human 57209 ZNF248 zinc finger protein 248 XM_017016445.1 100% 100%
10 human 57209 ZNF248 zinc finger protein 248 XM_017016444.1 95.1% 94.5% (many diffs)
11 human 57209 ZNF248 zinc finger protein 248 NM_001352482.1 75.1% 75.1% 0_1ins432
12 human 57209 ZNF248 zinc finger protein 248 NM_001352483.1 75.1% 75.1% 0_1ins432
13 human 57209 ZNF248 zinc finger protein 248 NM_001352484.1 75.1% 75.1% 0_1ins432
14 human 57209 ZNF248 zinc finger protein 248 NM_001352485.1 75.1% 75.1% 0_1ins432
15 human 57209 ZNF248 zinc finger protein 248 NM_001352486.1 75.1% 75.1% 0_1ins432
16 human 57209 ZNF248 zinc finger protein 248 NM_001352487.1 75.1% 75.1% 0_1ins432
17 human 57209 ZNF248 zinc finger protein 248 NM_001352488.1 75.1% 75.1% 0_1ins432
18 human 57209 ZNF248 zinc finger protein 248 NM_001352489.1 75.1% 75.1% 0_1ins432
19 human 57209 ZNF248 zinc finger protein 248 NM_001352490.1 75.1% 75.1% 0_1ins432
20 human 57209 ZNF248 zinc finger protein 248 NM_001352491.1 75.1% 75.1% 0_1ins432
21 human 57209 ZNF248 zinc finger protein 248 NM_001352492.1 75.1% 75.1% 0_1ins432
22 human 57209 ZNF248 zinc finger protein 248 NM_001267605.1 20.4% 19.1% (many diffs)
23 human 57209 ZNF248 zinc finger protein 248 NM_001267606.1 20.4% 19.1% (many diffs)
24 human 57209 ZNF248 zinc finger protein 248 NM_001352477.2 20.4% 19.1% (many diffs)
25 human 57209 ZNF248 zinc finger protein 248 NM_001352478.1 20.4% 19.1% (many diffs)
26 human 57209 ZNF248 zinc finger protein 248 NM_001352479.2 20.4% 19.1% (many diffs)
27 human 57209 ZNF248 zinc finger protein 248 NM_001352480.1 20.4% 19.1% (many diffs)
28 human 57209 ZNF248 zinc finger protein 248 NM_001352481.2 20.4% 19.1% (many diffs)
29 human 57209 ZNF248 zinc finger protein 248 XM_011519599.1 20.4% 19.1% (many diffs)
30 human 57209 ZNF248 zinc finger protein 248 XM_011519600.2 20.4% 19.1% (many diffs)
31 human 57209 ZNF248 zinc finger protein 248 NM_001267607.3 20.2% 19.5% (many diffs)
32 human 57209 ZNF248 zinc finger protein 248 NM_001352476.2 20.2% 19.5% (many diffs)
33 human 57209 ZNF248 zinc finger protein 248 NM_001352493.2 19% 18.9% 331_332delCAinsG;333_334ins1405
34 human 57209 ZNF248 zinc finger protein 248 NM_001352494.2 19% 18.9% 331_332delCAinsG;333_334ins1405
35 human 57209 ZNF248 zinc finger protein 248 XM_017016451.1 19% 18.9% 331_332delCAinsG;333_334ins1405
36 human 57209 ZNF248 zinc finger protein 248 XM_017016448.1 17.9% 17.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1806
ORF length:
1737
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaacaaatcc caggaacaag tgtcattcaa ggatgtatgt gtggacttca
121ctcaggaaga gtggtatctg ctggaccctg ctcagaagat tctatacaga gatgtgatcc
181tggaaaatta tagcaatctt gtctcagtag ggtattgcat tactaaacca gaagtgatct
241ttaagatcga gcaaggagaa gagccctgga tattagaaaa aggattccca agccagtgcc
301acccagaaag gaaatggaaa gttgatgacg tgttagagag cagccaggaa aatgaagatg
361accatttttg ggagcttcta ttccacaaca acaaaacagt aagtgtagaa aatggagata
421gaggaagcaa aactttcaat ttgggcacag accctgtttc tttaagaaat tatccctata
481aaatatgtga ctcatgtgaa atgaatttga aaaatatttc gggcttaatt attagtaaaa
541agaactgttc cagaaagaag cctgatgagt ttaatgtatg tgagaaattg ctccttgata
601ttaggcatga gaaaatccct attggagaga agtcttataa atatgatcaa aaaaggaatg
661ccattaatta tcaccaggat ctcagtcagc caagttttgg ccaatctttt gagtatagta
721aaaatggaca aggcttccat gatgaggcag cattttttac aaataagaga tctcagatag
781gagagacagt ctgtaaatat aacgaatgtg gaagaacctt cattgaaagt ttaaagctga
841atatatctca aagacctcat ttggaaatgg agccgtatgg atgcagtatt tgcgggaagt
901ccttctgcat gaatttaagg tttggacatc agagagctct tacaaaggac aatccttatg
961aatataatga atatggggaa atcttctgtg acaattcagc tttcattatc catcagggag
1021cttacacaag aaagattctc cgtgaatata aagtgagtga caaaacctgg gaaaagtcag
1081ctctcttaaa acatcaaata gtacacatgg ggggaaagtc ttatgattac aatgaaaatg
1141ggagtaattt cagcaagaag tcacatctta cccagcttcg gagagctcac acaggagaaa
1201aaacctttga atgtggtgaa tgtgggaaaa ccttctggga gaagtcaaac ctcactcaac
1261atcagagaac acacacagga gagaagccct atgaatgtac tgaatgtggg aaagcctttt
1321gccagaaacc acacctgacc aaccaTCAGC GAACACATAC AGGAGAAAAA CCCTATGAAT
1381GTAAGCAATG TGGAAAAACA TTCTGTGTGA AGTCAAACCT CACTGAACAT CAGAGAACAC
1441ACACAGGGGA GAAGCCCTAT GAATGTAATG CATGTGGGAA ATCCTTCTGC CACAGATCAG
1501CCCTCACTGT GCATCAGAGA ACACACACAG GGGAGAAACC GTTTATATGT AATGAATGTG
1561GAAAATCCTT CTGTGTGAAG TCAAACCTCA TTGTACATCA AAGAACTCAC ACTGGGGAGA
1621AACCATATAA GTGTAATGAA TGTGGGAAAA CCTTCTGTGA AAAATCAGCT CTCACTAAAC
1681ATCAGAGGAC TCACACAGGG GAGAAGCCGT ATGAGTGTAA TGCATGTGGG AAGACCTTTA
1741GTCAGAGGTC AGTGCTCACC AAACATCAGA GAATTCACAC AAGGGTGAAA GCTCTTTCAA
1801CATCCTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1861TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1921CTTGGCTTTA TATATCTTGT GGAAAGGACG ACGTATGCCG ATTTTCACCG CCAACACGCG
1981TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)