Construct: ORF TRCN0000469663
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015945.1_s317c1
- Derived from:
- ccsbBroadEn_13182
- DNA Barcode:
- GCAACAAATTGTTCGGTCACAAAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NCOA7 (135112)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469663
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_001122842.3 | 10.5% | 9.6% | (many diffs) |
| 2 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010270.1 | 10.5% | 9.6% | (many diffs) |
| 3 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010271.1 | 10.5% | 9.6% | (many diffs) |
| 4 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010272.2 | 10.5% | 9.6% | (many diffs) |
| 5 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010273.2 | 10.5% | 9.6% | (many diffs) |
| 6 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010274.2 | 10.5% | 9.6% | (many diffs) |
| 7 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_024446332.1 | 10.5% | 9.6% | (many diffs) |
| 8 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_001199619.2 | 10.3% | 9.5% | (many diffs) |
| 9 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_001199620.2 | 10.3% | 9.5% | (many diffs) |
| 10 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | NM_181782.5 | 10.3% | 9.5% | (many diffs) |
| 11 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_005266822.4 | 10.3% | 9.5% | (many diffs) |
| 12 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_006715340.4 | 10.3% | 9.5% | (many diffs) |
| 13 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_011535455.2 | 10.3% | 9.5% | (many diffs) |
| 14 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_017010269.1 | 10.3% | 9.5% | (many diffs) |
| 15 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XM_024446331.1 | 10.3% | 9.5% | (many diffs) |
| 16 | human | 135112 | NCOA7 | nuclear receptor coactivator 7 | XR_001743165.2 | 5.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 396
- ORF length:
- 306
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGATACCAA GGAAGAGAAG AAGGAACGGA 121 AACAAAGTTA TTTTGCTCGA CTGAAAAAGA AAAAACAAGC CAAACAAAAT GCAGAGACAG 181 CCTCAGCTGT AGCTACAAGG ACTCATACTG GGAAGGAAGA TAATAATACA GTAGTTTTAG 241 AGCCAGACAA GTGCAACATT GCTGTGGAAG AGGAATATAT GACTGATGAG AAAAAAAAGA 301 GAAAAAGTAA TCAGTTAAAG GAGATCAGGC GTACAGAACT AAAGAGATAT TATAGTATTG 361 GTGAGTATTC ATGGCGTTAC TGCAGTATTT TCATTTACCC AACTTTCTTG TACAAAGTGG 421 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 481 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 541 AGCAACAAAT TGTTCGGTCA CAAACACGCG TTAAGTCgac aatcaacctc tggattacaa 601 aatttgtgaa agatt