Construct: ORF TRCN0000469731
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016865.1_s317c1
- Derived from:
- BRDN0000398428
- DNA Barcode:
- CTTTTAGTCTATGACGTTTGCCAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HNRNPA1 (3178)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469731
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | NM_002136.4 | 45.2% | 44.3% | (many diffs) |
| 2 | human | 144983 | HNRNPA1L2 | heterogeneous nuclear ribon... | NM_001011724.2 | 45.2% | 44% | (many diffs) |
| 3 | human | 144983 | HNRNPA1L2 | heterogeneous nuclear ribon... | NM_001011725.2 | 45.2% | 44% | (many diffs) |
| 4 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | NM_031157.4 | 38.8% | 38.1% | (many diffs) |
| 5 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | XM_005268826.2 | 38.8% | 38.1% | (many diffs) |
| 6 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | NR_135167.2 | 34.5% | (many diffs) | |
| 7 | human | 664709 | HNRNPA1P10 | heterogeneous nuclear ribon... | NR_002944.2 | 31.9% | (many diffs) | |
| 8 | human | 3178 | HNRNPA1 | heterogeneous nuclear ribon... | XR_245923.2 | 30.9% | (many diffs) | |
| 9 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | NM_010447.5 | 41.7% | 44.3% | (many diffs) |
| 10 | mouse | 545091 | Hnrnpa1l2-ps2 | heterogeneous nuclear ribon... | NM_001165971.1 | 40.9% | 42.5% | (many diffs) |
| 11 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | NM_001039129.4 | 35.8% | 38% | (many diffs) |
| 12 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | NR_104427.1 | 30.2% | (many diffs) | |
| 13 | mouse | 654467 | Gm10052 | predicted pseudogene 10052;... | NR_002885.3 | 28% | (many diffs) | |
| 14 | mouse | 434858 | Gm5643 | predicted gene 5643; hetero... | NR_002883.1 | 22.8% | (many diffs) | |
| 15 | mouse | 15382 | Hnrnpa1 | heterogeneous nuclear ribon... | XR_383983.2 | 20.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 507
- ORF length:
- 438
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtctaagtca gcgtctccaa aagagcccga acagctgagg aagctcttca 121 ttggagggtt gagctttgaa acaactgatg agagcctgag gagccatttt gagcaatggg 181 gaacgctcac agacTGTGTG GTAATGAGAG ATCCAAACAC CAAGCGCTCC AGGGGCTTTG 241 GGTTTGTCAC ATATGCCACT GTGGAGGAGG TGGATGCAGC TATGAATGCA AGGCCACACA 301 AGGTGGATGG AAGAGTTGTG GAACCAAAGA GAGCTGTCTC CAGAGAAGAT TCTCAAAGAC 361 CAGGTGCCCA CTTAACTGTG AAAAAGATAT TTGTTGGTGG CATTAAAGAA GACACTGAAG 421 AACATCACCT AAGAGATTAT TTTGAACAGT ATGGAAAAAT TGAAGTGATT GAAATCATGA 481 CTGACCGAGG CAGTGGCAGA AGATTTTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 541 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 601 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACTTTTAGT 661 CTATGACGTT TGCCATACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 721 aagatt