Transcript: Human NR_002944.2

Homo sapiens heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 (HNRNPA1P10), non-coding RNA.

Source:
NCBI, updated 2018-05-24
Taxon:
Homo sapiens (human)
Gene:
HNRNPA1P10 (664709)
Length:
1354
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_002944.2
NBCI Gene record:
HNRNPA1P10 (664709)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_002944.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235098 ACCCATGAAGGGAGGAAATTT pLKO_005 881 3UTR 100% 15.000 7.500 Y HNRNPA1 n/a
2 TRCN0000235095 ATATTTGTTGGTGGCATTAAA pLKO_005 378 3UTR 100% 15.000 7.500 Y HNRNPA1 n/a
3 TRCN0000235097 CAACAATCAGTCTTCAAATTT pLKO_005 857 3UTR 100% 15.000 7.500 Y HNRNPA1 n/a
4 TRCN0000240128 GACTGTATTTGTGACTAATTG pLKO_005 1188 3UTR 100% 13.200 6.600 Y HNRNPA1P35 n/a
5 TRCN0000313631 GACTGTATTTGTGACTAATTG pLKO_005 1188 3UTR 100% 13.200 6.600 Y Hnrnpa1 n/a
6 TRCN0000241551 GATATTTGTTGGTGGCATTAA pLKO_005 377 3UTR 100% 13.200 6.600 Y HNRNPA1L2 n/a
7 TRCN0000241555 TGGTGGAAGCTACAATGATTT pLKO_005 827 3UTR 100% 13.200 6.600 Y HNRNPA1L2 n/a
8 TRCN0000006586 AGATATTTGTTGGTGGCATTA pLKO.1 376 3UTR 100% 10.800 5.400 Y HNRNPA1 n/a
9 TRCN0000293274 AGATATTTGTTGGTGGCATTA pLKO_005 376 3UTR 100% 10.800 5.400 Y HNRNPA1 n/a
10 TRCN0000235096 CGACCATGACTCCGTGGATAA pLKO_005 521 3UTR 100% 10.800 5.400 Y HNRNPA1 n/a
11 TRCN0000368907 GCTATAATGGATTTGGTAATG pLKO_005 787 3UTR 100% 10.800 5.400 Y HNRNPA1 n/a
12 TRCN0000240127 GGCTATAATGGATTTGGTAAT pLKO_005 786 3UTR 100% 10.800 5.400 Y HNRNPA1P35 n/a
13 TRCN0000006584 CGAAGTGGTTCTGGAAACTTT pLKO.1 645 3UTR 100% 5.625 2.813 Y HNRNPA1 n/a
14 TRCN0000006583 GCCACAACTGTGAAGTTAGAA pLKO.1 574 3UTR 100% 5.625 2.813 Y HNRNPA1 n/a
15 TRCN0000148048 GAGGACTGTATTTGTGACTAA pLKO.1 1185 3UTR 100% 4.950 2.475 Y HNRNPA1L2 n/a
16 TRCN0000055266 GCAATTACAACAATCAGTCTT pLKO.1 850 3UTR 100% 4.950 2.475 Y Hnrnpa1 n/a
17 TRCN0000006585 TGTGGTAATGAGAGATCCAAA pLKO.1 188 3UTR 100% 4.950 2.475 Y HNRNPA1 n/a
18 TRCN0000147655 GCTTTGAAACAACTGATGAGA pLKO.1 124 3UTR 100% 3.000 1.500 Y HNRNPA1L2 n/a
19 TRCN0000241554 AGGTGGATGCAGCTATGAATA pLKO_005 259 3UTR 100% 13.200 6.600 Y HNRNPA1L2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_002944.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00765 pDONR223 100% 70.4% None (many diffs) n/a
2 ccsbBroad304_00765 pLX_304 0% 70.4% V5 (many diffs) n/a
3 TRCN0000473586 GGTGGCTTCAACTTACTCATTGAC pLX_317 46.7% 70.4% V5 (many diffs) n/a
4 TRCN0000469731 CTTTTAGTCTATGACGTTTGCCAT pLX_317 70% 31.9% V5 (many diffs) n/a
Download CSV