Construct: ORF TRCN0000469868

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013237.1_s317c1
Derived from:
ccsbBroadEn_13486
DNA Barcode:
GCACTGACACATTAACGCTCCAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NALCN (259232)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469868
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 259232 NALCN sodium leak channel, non-se... NM_001350750.2 12.6% 12.6% (many diffs)
2 human 259232 NALCN sodium leak channel, non-se... NM_001350751.2 12.6% 12.6% (many diffs)
3 human 259232 NALCN sodium leak channel, non-se... XM_011521069.2 12.5% 12.5% (many diffs)
4 human 259232 NALCN sodium leak channel, non-se... NM_001350749.2 12.4% 12.4% (many diffs)
5 human 259232 NALCN sodium leak channel, non-se... NM_052867.4 12.4% 12.4% (many diffs)
6 human 259232 NALCN sodium leak channel, non-se... XM_011521067.2 12.3% 12.2% (many diffs)
7 human 259232 NALCN sodium leak channel, non-se... NM_001350748.2 12.2% 12.2% (many diffs)
8 human 259232 NALCN sodium leak channel, non-se... XM_024449336.1 12.1% 12% (many diffs)
9 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316066.2 16.2% 17.8% (many diffs)
10 mouse 338370 Nalcn sodium leak channel, non-se... NM_177393.4 11.3% 12.4% (many diffs)
11 mouse 338370 Nalcn sodium leak channel, non-se... XM_030247866.1 11.2% 12.3% (many diffs)
12 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316064.2 11.2% 12.3% (many diffs)
13 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316063.2 11.1% 12.2% (many diffs)
14 mouse 338370 Nalcn sodium leak channel, non-se... XM_011245094.3 11.1% 12.1% (many diffs)
15 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316062.2 11% 12% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
720
ORF length:
654
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct caaaaggaag cagagttcca gggtggaagc ccagccagtc actgactttg
121gtcctgatga gtctctgtcg gataatgctg acatcctctg gattaacaaa ccatgggttc
181actctttgct gcgcatctgt gccatcatca gcgtcatttc tgtttgtatg aatacgccaa
241tgaccttcga gcactatcct ccacttcagt atgtgacctt cactttGGAT ACATTATTGA
301TGTTTCTCTA CACGGCAGAG ATGATAGCAA AAATGCACAT CCGGGGCATT GTCAAGGGGG
361ATAGTTCCTA TGTGAAAGAT CGCTGGTGTG TTTTTGATGG ATTTATGGTC TTTTGCCTTT
421GGGTTTCTTT GGTGCTACAG GTGTTTGAAA TTGCTGATAT AGTTGATCAG ATGTCACCTT
481GGGGCATGTT GCGGATTCCA CGGCCACTGA TTATGATCCG AGCATTCCGG ATTTATTTCC
541GATTTGAACT GCCAAGGACC AGAATTACAA ATATTTTAAA GCGATCGGGA GAACAAATAT
601GGAGTGTTTC CATTTTTCTA CTTTTCTTTC TACTTCTTTA TGGAATTTTA GGAGTTCAGA
661TGTTTGGAAC ATTTACTTAT CACTGTGTTG TAAATGACAC AAAGCCAGGA CTCTCACTCT
721GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
781GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
841TTTATATATC TTGTGGAAAG GACGAGCACT GACACATTAA CGCTCCAGCA CGCGTTAAGT
901Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)