Construct: ORF TRCN0000469872
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007608.1_s317c1
- Derived from:
- ccsbBroadEn_07776
- DNA Barcode:
- TCTAGGTTCCCGGTCCCTTTTTAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT6 (11226)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469872
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | NM_007210.4 | 99.9% | 100% | 1852T>C |
| 2 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_005268607.1 | 99.9% | 100% | 1852T>C |
| 3 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_006719214.2 | 99.9% | 100% | 1852T>C |
| 4 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_011537819.3 | 99.9% | 100% | 1852T>C |
| 5 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_011537822.2 | 99.9% | 100% | 1852T>C |
| 6 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_017018745.2 | 99.9% | 100% | 1852T>C |
| 7 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448811.1 | 99.9% | 100% | 1852T>C |
| 8 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448812.1 | 99.9% | 100% | 1852T>C |
| 9 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448813.1 | 99.9% | 100% | 1852T>C |
| 10 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448814.1 | 99.9% | 100% | 1852T>C |
| 11 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448815.1 | 99.9% | 100% | 1852T>C |
| 12 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448816.1 | 99.9% | 100% | 1852T>C |
| 13 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XM_024448817.1 | 99.9% | 100% | 1852T>C |
| 14 | human | 11226 | GALNT6 | polypeptide N-acetylgalacto... | XR_001748566.2 | 36.4% | (many diffs) | |
| 15 | mouse | 207839 | Galnt6 | UDP-N-acetyl-alpha-D-galact... | NM_001161767.1 | 87.1% | 88.5% | (many diffs) |
| 16 | mouse | 207839 | Galnt6 | UDP-N-acetyl-alpha-D-galact... | NM_001161768.1 | 87.1% | 88.5% | (many diffs) |
| 17 | mouse | 207839 | Galnt6 | UDP-N-acetyl-alpha-D-galact... | NM_172451.3 | 87.1% | 88.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1932
- ORF length:
- 1866
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag gctcctccgc agacgccaca tgcccctgcg cctggccatg gtgggctgcg 121 cctttgtgct cttcctcttc ctcctgcata gggatgtgag cagcagagag gaggccacag 181 agaagccgtg gctgaagtcc ctggtgagcc ggaaggatca cgtcctggac ctcatgctgg 241 aggccatgaa caaccttaga gattcaatgc ccaagctcca aatcagggct ccagaagccc 301 agcagactct gttctccata aaccagtcct gcctccctgg gttctatacc ccagctgaac 361 tgaagccctt ctgggaacgg ccaccacagg accccaatgc ccctggggca gatggaaaag 421 catttcagaa gagcaagtgg acccccctgg agacccagga aaaggaagaa ggctataaga 481 agcactgttt caatgccttt gccagcgacc ggatctccct gcagaggtcc ctggggccag 541 acacccgacc acctgagtgt gtggaccaga agttccggcg ctgcccccca ctggccacca 601 ccagcgtgat cattgtgttc cacaacgaag cctggtccac actgctgcga acagtgtaca 661 gcgtcctaca caccacccct gccatcttgc tcaaggagat catactggtg gatgatgcca 721 gcacagagga gcacctaaag gagaagctgg agcagtacgt gaagcagctg caggtggtga 781 gggtggtgcg gcaggaggag cggaaggggc tgatcaccgc ccggctgctg ggggccagcg 841 tggcacaggc ggaggtgctc acgttcctgg atgcccactg tgagtgcttc cacggctggc 901 tggagcccct cctggctcga atcgctgagg acaagacagt ggtggtgagc ccagacatcg 961 tcaccatcga ccttaatact tttgagttcg ccaagcccgt ccagaggggc agagtccata 1021 gccgaggcaa ctttgactgg agcctgacct tcggctggga aacacttcct ccacatgaga 1081 agcagaggcg caaggatgaa acctacccca tcaaatcccc gacgtttgct ggtggcctct 1141 tctccatctc caagtcctac tttgagcaca tcggtaccta tgataatcag atggagatct 1201 ggggagggga gaacgtggaa atgtccttcc gggtgtggca gtgtgggggc cagctggaga 1261 tcatcccctg ctctgtcgta ggccatgtgt tccggaccaa gagcccccac accttcccca 1321 agggcactag tgtcattgct cgcaatcaag tgcgcctggc agaggtctgg atggacagct 1381 acaagaagat tttctatagg agaaatctgc aggcagcaaa gatggcccaa gagaaatcct 1441 tcggtgacat ttcggaacga ctgcagctga gggaacaact gcactgtcac aacttttcct 1501 ggtacctgca caatgtctac ccagagatgt ttgttcctga cctgacgccc accTTCTATG 1561 GTGCCATCAA GAACCTCGGC ACCAACCAAT GCCTGGATGT GGGTGAGAAC AACCGCGGGG 1621 GGAAGCCCCT CATCATGTAC TCCTGCCACG GCCTTGGCGG CAACCAGTAC TTTGAGTACA 1681 CAACTCAGAG GGACCTTCGC CACAACATCG CAAAGCAGCT GTGTCTACAT GTCAGCAAGG 1741 GTGCTCTGGG CCTTGGGAGC TGTCACTTCA CTGGCAAGAA TAGCCAGGTC CCCAAGGACG 1801 AGGAATGGGA ATTGGCCCAG GATCAGCTCA TCAGGAACTC AGGATCTGGT ACCTGCCTGA 1861 CATCCCAGGA CAAAAAGCCA GCCATGGCCC CCTGCAATCC CAGTGACCCC CATCAGCTGT 1921 GGCTCTTTGT CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 1981 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 2041 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATCT AGGTTCCCGG TCCCTTTTTA 2101 CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t