Construct: ORF TRCN0000469938

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007351.1_s317c1
Derived from:
ccsbBroadEn_13296
DNA Barcode:
AGCGGTATATCAGTGAATTCAAAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IQUB (154865)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469938
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 154865 IQUB IQ motif and ubiquitin doma... XM_005250162.5 49.2% 49.2% 1120_2274del
2 human 154865 IQUB IQ motif and ubiquitin doma... NM_001282855.1 47.1% 47.1% 1120_2373del
3 human 154865 IQUB IQ motif and ubiquitin doma... NM_001321293.1 47.1% 47.1% 1120_2373del
4 human 154865 IQUB IQ motif and ubiquitin doma... NM_178827.5 47.1% 47.1% 1120_2373del
5 human 154865 IQUB IQ motif and ubiquitin doma... XM_005250161.3 47.1% 47.1% 1120_2373del
6 human 154865 IQUB IQ motif and ubiquitin doma... XM_011515833.2 47.1% 47.1% 1120_2373del
7 human 154865 IQUB IQ motif and ubiquitin doma... XM_011515834.3 47.1% 47.1% 1120_2373del
8 human 154865 IQUB IQ motif and ubiquitin doma... XM_017011771.1 47.1% 47.1% 1120_2373del
9 human 154865 IQUB IQ motif and ubiquitin doma... NR_104245.1 38% 1_177del;1297_2939del
10 human 154865 IQUB IQ motif and ubiquitin doma... NR_104244.1 33.9% 1_164del;1284_3298del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1185
ORF length:
1119
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc taatcaacag gagaagtatg aagctcagaa tatagtcaat tcaacagaag
121agagtgatga tgcttttgat actgtcacta ttccagttcc ctcagaagag cctcaagagt
181cagatcaaac tgaagagcat gaatctggaa tagaacaatt cagtgagagc catgcaatac
241atgttgagga gcagagtgac caaagctttt caagcctgga accagacaat gaacaactca
301tggaagaggt tatatcacca agacaagttt catatactcc gcaacatcat gaaaagcaat
361atgcaatgca gaggccaaat gatgatagtt tggcatttct ggataaaata aagtctgtaa
421aggaatcttt gcaagaatca gtggaagatt ctctagcaac agtaaaagtt gtacttattc
481cagtgggcca ggaaattgta atacctttta aggttgatac cattcttaaa tatcttaagg
541accatttttc acacttatta ggtatcccac attctgtact gcagataaga tactcaggaa
601aaattcttaa aaataatgag actctagtac aacatggagt taagccacag gaaattgtac
661aagtggaaat cttttctaca aaTCCAGATC TGTATCCAGT CAGAAGAATA GATGGATTAA
721CTGATGTCTC TCAAATCATA ACTGTCACTG TCCAAACTGG ACTTGATCAA TACCAGCAGG
781TACCTGTTGA GATTGTCAAA TCTGACTTTC ACAAACCATT TCTTGGTGGA TTCAGACATA
841AAGTAACAGG AGTAGAGTAT CACAATGCTG GAACACAAAC TGTACCTAAA AGGATTCCCG
901AAAGACTCAG TATATTTTGT AGGGATACGC AGACAGTTTT TCAGAAAAAA AATCTCCAAC
961AAACTACAAA TACAACATCC ACACAGATGA CTAACATTGG TGTATATGTA TCAAATATGA
1021CTGATAAACT GGTAACACCA GGAAAGTATT TTTCAGCAGC AGAATACCAT GCTCAAAGAC
1081TAAAGGCGGT GATAGTGATA CAGACTTACT ACAGGCAATG GCATGCTAAA ATCTTCGTAG
1141AGAATTTAAG AAGACAGAAA AGCTTAAGAC TGGAATGGGA AACATACCCA ACTTTCTTGT
1201ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1261AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1321GAAAGGACGA AGCGGTATAT CAGTGAATTC AAAAACGCGT TAAGTCgaca atcaacctct
1381ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)