Construct: ORF TRCN0000470063

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007990.1_s317c1
Derived from:
ccsbBroadEn_10947
DNA Barcode:
GTCACAGTACGACTGTGGATATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABLIM1 (3983)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470063
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322896.2 100% 100%
2 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322892.2 93.9% 93.9% 94_171del
3 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322893.2 93.9% 93.9% 94_171del
4 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322890.2 93.4% 93.4% 94_171del;541_546delGATGCA
5 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322891.2 93.4% 93.4% 94_171del;541_546delGATGCA
6 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322897.2 89.4% 81.1% (many diffs)
7 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322900.2 88.2% 88.2% 462_463ins141
8 human 3983 ABLIM1 actin binding LIM protein 1 NM_006720.4 88.1% 88.1% 94_255del
9 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448022.1 86.7% 86.7% 94_171del;493_597del
10 human 3983 ABLIM1 actin binding LIM protein 1 NM_001352443.2 86.4% 86.4% 94_171del;493_597del;646_651delGATGCA
11 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016259.1 86.4% 86.4% 94_171del;493_597del;646_651delGATGCA
12 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322894.2 84.1% 76.6% (many diffs)
13 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322895.2 84.1% 76.6% (many diffs)
14 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322898.2 82.9% 82.9% 94_171del;540_541ins141
15 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322899.2 82.9% 82.9% 94_171del;540_541ins141
16 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322888.2 79.9% 70.5% (many diffs)
17 human 3983 ABLIM1 actin binding LIM protein 1 XM_005269827.4 79.5% 79.5% 94_171del;493_717del;766_771delGATGCA
18 human 3983 ABLIM1 actin binding LIM protein 1 XM_006717847.1 79.5% 79.5% 94_171del;493_717del;766_771delGATGCA
19 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322889.2 79% 72.2% (many diffs)
20 human 3983 ABLIM1 actin binding LIM protein 1 XM_005269826.1 75.3% 75.3% 94_255del;577_801del;850_855delGATGCA
21 human 3983 ABLIM1 actin binding LIM protein 1 XM_006717846.3 75.3% 75.3% 94_255del;577_801del;850_855delGATGCA
22 human 3983 ABLIM1 actin binding LIM protein 1 NM_001352442.2 67.8% 67.8% 1_492del;586_663del
23 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016247.1 64.7% 64.7% 1_492del;586_747del
24 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448011.1 61.3% 61.3% 1_492del;586_747del;1069_1173del
25 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448020.1 61.2% 56.5% (many diffs)
26 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322885.3 60.2% 60.2% 1_717del;811_888del
27 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322884.3 60% 60% 1_717del;811_888del;1258_1263delGATGCA
28 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448013.1 60% 60% (many diffs)
29 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016256.1 59.9% 59.9% 1_720del;814_891del;1261_1266delGATGCA
30 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448021.1 59.8% 59.8% 1_492del;586_663del;1032_1033ins141
31 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016248.1 59.2% 53.1% (many diffs)
32 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322883.2 58.7% 58.7% 1_768del;862_939del
33 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448015.1 58.4% 54.1% (many diffs)
34 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448010.1 57.7% 57.7% 1_492del;586_747del;1069_1293del
35 human 3983 ABLIM1 actin binding LIM protein 1 XM_011539801.2 57.6% 57.6% (many diffs)
36 human 3983 ABLIM1 actin binding LIM protein 1 XM_011539805.1 57.6% 57.6% (many diffs)
37 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448018.1 57.5% 57.5% 1_720del;814_975del;1345_1350delGATGCA
38 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448017.1 57.1% 57.1% 1_492del;586_747del;1116_1117ins141
39 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016255.1 57% 57% (many diffs)
40 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448012.1 56.7% 51% (many diffs)
41 human 3983 ABLIM1 actin binding LIM protein 1 NM_001003407.2 55.8% 55.8% 1_768del;862_939del;1261_1365del
42 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322886.3 54.4% 50.4% (many diffs)
43 human 3983 ABLIM1 actin binding LIM protein 1 NM_001352440.1 54.3% 50.4% (many diffs)
44 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016250.1 53.9% 53.9% (many diffs)
45 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448016.1 53.8% 53.8% (many diffs)
46 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322882.2 53.6% 53.6% (many diffs)
47 human 3983 ABLIM1 actin binding LIM protein 1 NM_001352441.1 53% 53% 1_720del;814_891del;1260_1261ins141
48 human 3983 ABLIM1 actin binding LIM protein 1 XM_017016245.1 52% 52% (many diffs)
49 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448014.1 51.9% 51.9% (many diffs)
50 human 3983 ABLIM1 actin binding LIM protein 1 NM_001322887.2 51.8% 51.8% 1_768del;862_939del;1308_1309ins141
51 human 3983 ABLIM1 actin binding LIM protein 1 NM_002313.7 51.5% 51.5% 1_948del;1042_1119del;1441_1545del
52 human 3983 ABLIM1 actin binding LIM protein 1 XM_011539802.2 51.5% 51.5% (many diffs)
53 human 3983 ABLIM1 actin binding LIM protein 1 XM_006717837.2 50.8% 50.8% (many diffs)
54 human 3983 ABLIM1 actin binding LIM protein 1 XM_024448019.1 31.9% 22.1% (many diffs)
55 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_001347459.1 84.2% 88.7% (many diffs)
56 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318184.1 83.8% 88.3% (many diffs)
57 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318186.1 74% 78.9% (many diffs)
58 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527048.3 71.3% 75.1% (many diffs)
59 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318182.1 67.6% 71.2% (many diffs)
60 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318183.1 67.6% 71.2% (many diffs)
61 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_001103178.2 65.8% 69.4% (many diffs)
62 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_001290816.1 53.7% 56.6% (many diffs)
63 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318178.1 52.8% 55.7% (many diffs)
64 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527041.3 52.7% 55.5% (many diffs)
65 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_001103177.2 51.2% 53.9% (many diffs)
66 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527039.3 50.8% 53.5% (many diffs)
67 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527038.3 50.6% 53.3% (many diffs)
68 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527037.3 50.3% 53% (many diffs)
69 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318180.1 48.9% 48% (many diffs)
70 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_001290815.1 48.8% 48% (many diffs)
71 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527035.3 48.4% 51% (many diffs)
72 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527034.3 48.2% 50.8% (many diffs)
73 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318179.1 47.9% 47.1% (many diffs)
74 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527033.3 47.5% 50% (many diffs)
75 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318177.1 47.1% 44.6% (many diffs)
76 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318176.1 46.8% 49.4% (many diffs)
77 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318175.1 46.6% 49.1% (many diffs)
78 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318174.1 46.5% 49% (many diffs)
79 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318181.1 46.4% 49.5% (many diffs)
80 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318173.1 46.3% 48.8% (many diffs)
81 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527040.3 46% 45.3% (many diffs)
82 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_017318172.1 45.9% 48.4% (many diffs)
83 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527028.3 45.8% 48.2% (many diffs)
84 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527036.3 45.3% 43% (many diffs)
85 mouse 226251 Ablim1 actin-binding LIM protein 1 XM_006527044.3 44.6% 47.5% (many diffs)
86 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_001290813.1 43.9% 43.3% (many diffs)
87 mouse 226251 Ablim1 actin-binding LIM protein 1 NM_178688.3 41.7% 43.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1269
ORF length:
1203
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt cacagaagga gaggaaatgt atcttcaagg ctccaccgtt tggcatcccg
121actgtaagca atctacgaag accgaggaaa agctgcgggc aaaagtagac aatgagatcc
181tggattacaa ggatttagca gccattccga aggtcaaggc aatttatgac attgaacgtc
241cagatcttat tacctatgag cctttctaca cttcgggcta tgatgacaaa caggagagac
301agagccttgg agagtctccg aggactttgt ctcctactcc atcagcagaa gggtaccagg
361atgttcggga tcggatgatc catcggtcca cgagccaggg ctccatcaac tcccctgtgt
421acagccgcca cagctacact ccaaccacgt cccgctctcc ccagcatttc cacagacctg
481atcaaggaat caacatttac cgaaagccac ccatctacaa acagcatgct gccttggcag
541cccagagcaa gtcctcagaa gatatcatca agttttccaa gttcccagca gcccaggcac
601cagaccccag cgagacacca aagattgaga cggaccactg gcctggtccc ccctcatttg
661ctgtcgtagg acctgacatg aaacgcagat ctagtggcag agaggaagat gatgaggaac
721ttctgagacg tcggcagctt caagaagagc aattaatgaa gcttaactca ggcctgggac
781agttgatctt gaaagaagag atggagaaag agagccggga aaggtcatct ctgttagcca
841gtcgctacga ttctcccatc aactcagctt cacatattcc atcatctaaa actgcatctc
901tccctggcta tGGAAGAAAT GGGCTTCACC GGCCTGTTTC TACCGACTTC GCTCAGTATA
961ACAGCTATGG GGATGTCAGC GGGGGAGTGC GAGATTACCA GACACTCCCA GATGGCCACA
1021TGCCTGCAAT GAGAATGGAC CGAGGAGTGT CTATGCCCAA CATGTTGGAA CCAAAGATAT
1081TTCCATATGA AATGCTCATG GTGACCAACA GAGGGCGAAA CAAAATCCTC AGAGAGGTGG
1141ACAGAACCAG GCTGGAGCGC CACTTAGCCC CTGAAGTGTT TCGGGAAATC TTTGGAATGT
1201CCATACAGGA GTTTGACAGG TTACCTCTTT GGAGACGCAA CGACATGAAG AAAAAAGCAA
1261AACTCTTCTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1321CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1381TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGTCACA GTACGACTGT GGATATTGAC
1441GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)