Construct: ORF TRCN0000470161

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005575.1_s317c1
Derived from:
ccsbBroadEn_10838
DNA Barcode:
AAGAAGACCAACCGCAGCCACAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GAS2 (2620)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470161
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2620 GAS2 growth arrest specific 2 NM_001351224.2 57.6% 56.3% (many diffs)
2 human 2620 GAS2 growth arrest specific 2 XM_011519975.1 56.6% 55.4% (many diffs)
3 human 2620 GAS2 growth arrest specific 2 XM_017017532.1 50% 48.9% (many diffs)
4 human 2620 GAS2 growth arrest specific 2 NM_001143830.2 44.7% 43.7% (many diffs)
5 human 2620 GAS2 growth arrest specific 2 NM_005256.4 44.7% 43.7% (many diffs)
6 human 2620 GAS2 growth arrest specific 2 NM_177553.3 44.7% 43.7% (many diffs)
7 human 2620 GAS2 growth arrest specific 2 XM_011519971.3 42.2% 41.3% (many diffs)
8 human 2620 GAS2 growth arrest specific 2 XM_011519972.3 42.2% 41.3% (many diffs)
9 human 2620 GAS2 growth arrest specific 2 XR_001747829.1 19.4% (many diffs)
10 human 2620 GAS2 growth arrest specific 2 NR_147085.2 15.5% (many diffs)
11 mouse 14453 Gas2 growth arrest specific 2 XM_017321982.1 41.5% 43.2% (many diffs)
12 mouse 14453 Gas2 growth arrest specific 2 NM_001330607.1 40% 42% (many diffs)
13 mouse 14453 Gas2 growth arrest specific 2 NM_008087.3 40% 42% (many diffs)
14 mouse 14453 Gas2 growth arrest specific 2 XM_006540624.3 40% 42% (many diffs)
15 mouse 14453 Gas2 growth arrest specific 2 XM_006540625.3 40% 42% (many diffs)
16 mouse 14453 Gas2 growth arrest specific 2 XM_006540626.3 40% 42% (many diffs)
17 mouse 14453 Gas2 growth arrest specific 2 XM_006540618.3 37.1% 38.7% (many diffs)
18 mouse 14453 Gas2 growth arrest specific 2 XM_006540619.3 37.1% 38.7% (many diffs)
19 mouse 14453 Gas2 growth arrest specific 2 XM_006540620.3 37.1% 38.7% (many diffs)
20 mouse 14453 Gas2 growth arrest specific 2 XM_006540621.3 37.1% 38.7% (many diffs)
21 mouse 14453 Gas2 growth arrest specific 2 XM_006540622.3 37.1% 38.7% (many diffs)
22 mouse 14453 Gas2 growth arrest specific 2 XM_006540623.3 37.1% 38.7% (many diffs)
23 mouse 14453 Gas2 growth arrest specific 2 XM_011250796.2 37.1% 38.7% (many diffs)
24 mouse 14453 Gas2 growth arrest specific 2 XM_011250797.2 37.1% 38.7% (many diffs)
25 mouse 14453 Gas2 growth arrest specific 2 XM_017321979.1 37.1% 38.7% (many diffs)
26 mouse 14453 Gas2 growth arrest specific 2 XM_017321980.1 37.1% 38.7% (many diffs)
27 mouse 14453 Gas2 growth arrest specific 2 XM_017321981.1 37.1% 38.7% (many diffs)
28 mouse 14453 Gas2 growth arrest specific 2 NM_001330608.1 23.7% 23.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
489
ORF length:
423
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg cactgcTCTG AGCCCAAAGG TACGCAGTGG GCCTGGCCTC TCTGATATGC
121ATCAGTATAG CCAATGGCTA GCCAGCAGAC ATGAAGCTAA TTTGCTACCA ATGAAAGAAG
181ATCTGGCCTT GTGGTTAACC AATCTATTAG GGAAGGAGAT TACAGCAGAA ACTTTTATGG
241AGAAGTTGGA CAATGGTGCC TTGCTCTGTC AACTTGCAGA AACTATGCAG GAGAAATTCA
301AGGAGAGCAT GGATGCTAAC AAGCCCACAA AGAATCTACC GTTGAAGAAG ATCCCATGCA
361AAACCAGTGC ACCCTCGGGC TCCTTTTTTG CCAGAGACAA TACAGCAAAT TTCTTATCCT
421GGTGCCGAGA TTTAGGGGTG GATGAAACGT GTCTATTTGA ATCGGAAGGT TTGGGATTTG
481GAGGCCAGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
541CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
601TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAAGAAG ACCAACCGCA GCCACAGCAC
661GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)