Transcript: Mouse XM_017321980.1

PREDICTED: Mus musculus growth arrest specific 2 (Gas2), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gas2 (14453)
Length:
2316
CDS:
284..1309

Additional Resources:

NCBI RefSeq record:
XM_017321980.1
NBCI Gene record:
Gas2 (14453)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017321980.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000088326 CCTTGTGGTTAACCAATCTAT pLKO.1 408 CDS 100% 5.625 7.875 N Gas2 n/a
2 TRCN0000335613 CCTTGTGGTTAACCAATCTAT pLKO_005 408 CDS 100% 5.625 7.875 N Gas2 n/a
3 TRCN0000088323 GCCATAATACTTAACTGGAAA pLKO.1 1785 3UTR 100% 4.950 3.960 N Gas2 n/a
4 TRCN0000348570 CTCAAATGGTAGCACTATTTA pLKO_005 1414 3UTR 100% 15.000 10.500 N Gas2 n/a
5 TRCN0000088325 CCAACCCTGAAGGACATGAAT pLKO.1 1232 CDS 100% 5.625 3.938 N Gas2 n/a
6 TRCN0000088324 CCGAGAAGTGTGTCTCTGTTT pLKO.1 793 CDS 100% 4.950 3.465 N Gas2 n/a
7 TRCN0000335614 CCGAGAAGTGTGTCTCTGTTT pLKO_005 793 CDS 100% 4.950 3.465 N Gas2 n/a
8 TRCN0000088327 GCTGCCGATGAAAGAAGACTT pLKO.1 385 CDS 100% 4.950 3.465 N Gas2 n/a
9 TRCN0000335612 GCTGCCGATGAAAGAAGACTT pLKO_005 385 CDS 100% 4.950 3.465 N Gas2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017321980.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10838 pDONR223 100% 37.1% 38.7% None (many diffs) n/a
2 ccsbBroad304_10838 pLX_304 0% 37.1% 38.7% V5 (many diffs) n/a
3 TRCN0000470161 AAGAAGACCAACCGCAGCCACAGC pLX_317 95.4% 37.1% 38.7% V5 (many diffs) n/a
Download CSV