Construct: ORF TRCN0000470182

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010362.1_s317c1
Derived from:
ccsbBroadEn_08399
DNA Barcode:
AAACACATGCGTTAAATACGACTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM106B (54664)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470182
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54664 TMEM106B transmembrane protein 106B NM_001134232.2 99.8% 99.6% 6A>N
2 human 54664 TMEM106B transmembrane protein 106B NM_018374.4 99.8% 99.6% 6A>N
3 human 54664 TMEM106B transmembrane protein 106B XM_005249789.1 99.8% 99.6% 6A>N
4 mouse 71900 Tmem106b transmembrane protein 106B NM_027992.3 88.3% 95.2% (many diffs)
5 mouse 71900 Tmem106b transmembrane protein 106B XM_006505169.3 88.3% 95.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
888
ORF length:
822
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg naagtctctt tctcatttgc ctttgcattc aagcaaagaa gatgcttatg
121atggagtcac atctgaaaac atgaggaatg gactggttaa tagtgaagtc cataatgaag
181atggaagaaa tggagatgtc tctcagtttc catatgtgga atttacagga agagatagtg
241tcacctgccc tacttgtcag ggaacaggaa gaattcctag ggggcaagaa aaccaactgg
301tggcattgat tccatatagt gatcagagat taaggccaag aagaacaaag ctgtatgtga
361tggcttctgt gtttgtctgt ctactccttt ctggattggc tgtgtttttc cttttccctc
421gctctatcga cgtgaaatac attggtgtaa aatcagccta tgtcagttat gatgttcaga
481agcgtacaat ttatttaaat atcacaaaca cactaaatat aacaaacaat aactattact
541ctgtcgaagt tgaaaacatc actgcccaag ttcaattttc aaaaacagtt attggaaagg
601cacgcttaaa CAACATAACC ATTATTGGTC CACTTGATAT GAAACAAATT GATTACACAG
661TACCTACCGT TATAGCAGAG GAAATGAGTT ATATGTATGA TTTCTGTACT CTGATATCCA
721TCAAAGTGCA TAACATAGTA CTCATGATGC AAGTTACTGT GACAACAACA TACTTTGGCC
781ACTCTGAACA GATATCCCAG GAGAGGTATC AGTATGTCGA CTGTGGAAGA AACACAACTT
841ATCAGTTGGG GCAGTCTGAA TATTTAAATG TACTTCAGCC ACAACAGTAC CCAACTTTCT
901TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
961CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1021GTGGAAAGGA CGAAAACACA TGCGTTAAAT ACGACTGACG CGTTAAGTCg acaatcaacc
1081tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)