Construct: ORF TRCN0000470233

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012413.1_s317c1
Derived from:
ccsbBroadEn_10735
DNA Barcode:
TGCAGCCACTTTTTTAGGCACCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ERCC8 (1161)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470233
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1161 ERCC8 ERCC excision repair 8, CSA... NM_001007234.3 99.8% 100% 435T>C
2 human 1161 ERCC8 ERCC excision repair 8, CSA... NM_000082.3 50.5% 46.3% (many diffs)
3 human 1161 ERCC8 ERCC excision repair 8, CSA... NM_001007233.2 35.8% 31.9% (many diffs)
4 mouse 71991 Ercc8 excision repaiross-compleme... XM_017315608.1 79.2% 78% (many diffs)
5 mouse 71991 Ercc8 excision repaiross-compleme... XM_011244697.2 72.8% 71.5% (many diffs)
6 mouse 71991 Ercc8 excision repaiross-compleme... XR_001780818.1 50% (many diffs)
7 mouse 71991 Ercc8 excision repaiross-compleme... NM_028042.3 44.5% 42.5% (many diffs)
8 mouse 71991 Ercc8 excision repaiross-compleme... XM_006517763.3 20.2% 17.4% (many diffs)
9 mouse 71991 Ercc8 excision repaiross-compleme... XR_382744.3 10.1% (many diffs)
10 mouse 71991 Ercc8 excision repaiross-compleme... XR_382743.3 10.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
681
ORF length:
615
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct ggggtttttg tccgcacgcc aaacgggttt ggaggaccct cttcgccttc
121ggagagcaga gtcaacacgg agagttttgg gactggaatt aaataaagac agagatgttg
181aaagaatcca cggcggtgga attaacaccc ttgacattga acctgttGAA GGGAGATACA
241TGTTATCAGG TGGTTCAGAT GGTGTGATTG TACTTTATGA CCTTGAGAAC TCCAGCAGAC
301AATCTTATTA CACATGTAAA GCAGTGTGTT CCATTGGCAG AGATCATCCT GATGTTCACA
361GATACAGTGT GGAGACTGTA CAGTGGTATC CTCATGACAC TGGCATGTTC ACATCAAGCT
421CATTTGATAA AACTCTGAAA GTATGGGATA CAAATACATT ACAAACTGCA GATGTATTTA
481ATTTTGAGGA AACAGTTTAC AGTCATCATA TGTCTCCAGT CTCCACCAAG CACTGTTTGG
541TAGCAGTTGG TACTAGAGGA CCCAAAGTAC AACTTTGTGA CTTGAAGTCT GGATCCTGTT
601CTCACATTCT ACAGGGTATT TTTATTTTAT TTCAAACGGC AACTACTTTG AGTAAACGAT
661TCAATAAAAA GAAACGTTAC TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
721CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
781AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATGCA GCCACTTTTT
841TAGGCACCTT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)