Construct: ORF TRCN0000470360

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018224.1_s317c1
Derived from:
ccsbBroadEn_13637
DNA Barcode:
ACATAACCGTGCATCCTCATCGCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC26A5 (375611)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470360
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 375611 SLC26A5 solute carrier family 26 me... NM_206884.3 91.6% 91.4% 1311_1406del;1515_1548delinsG
2 human 375611 SLC26A5 solute carrier family 26 me... NM_001321787.2 72.3% 72.2% 1419_1959delinsG
3 human 375611 SLC26A5 solute carrier family 26 me... XR_002956437.1 71.4% (many diffs)
4 human 375611 SLC26A5 solute carrier family 26 me... NM_206885.3 70.4% 67.5% (many diffs)
5 human 375611 SLC26A5 solute carrier family 26 me... NM_206883.3 69% 68.9% 1311_1406del;1515_2055delinsG
6 human 375611 SLC26A5 solute carrier family 26 me... NM_001167962.1 66.3% 66.2% 1419_2136delinsG
7 human 375611 SLC26A5 solute carrier family 26 me... NM_198999.3 63.5% 63.4% 1311_1406del;1515_2232delinsG
8 human 375611 SLC26A5 solute carrier family 26 me... XM_011516170.3 63.5% 63.4% 1311_1406del;1515_2232delinsG
9 human 375611 SLC26A5 solute carrier family 26 me... NR_135802.2 60% 1_292del;1712_2364del
10 human 375611 SLC26A5 solute carrier family 26 me... NR_120441.1 57.8% 1_182del;1602_2451del
11 human 375611 SLC26A5 solute carrier family 26 me... NR_120443.1 57.2% 1_182del;1412_1413ins78;1524_2265del
12 human 375611 SLC26A5 solute carrier family 26 me... NR_135801.1 48.8% 1_262del;1232_1233ins148;1533_2453delinsG
13 human 375611 SLC26A5 solute carrier family 26 me... NR_120442.1 47.8% (many diffs)
14 human 375611 SLC26A5 solute carrier family 26 me... XR_001744726.1 42.3% 1_1052del;2363_2458del;2568_3352del
15 human 375611 SLC26A5 solute carrier family 26 me... XR_001744727.2 17.1% 1_262del;1682_8281del
16 human 375611 SLC26A5 solute carrier family 26 me... XR_001744725.2 16.9% 1_262del;1573_1668del;1778_8377del
17 mouse 80979 Slc26a5 solute carrier family 26, m... NM_030727.5 56.4% 61.9% (many diffs)
18 mouse 80979 Slc26a5 solute carrier family 26, m... NM_001289787.1 52.1% 57.2% (many diffs)
19 mouse 80979 Slc26a5 solute carrier family 26, m... XM_006535818.1 49.2% 54.4% (many diffs)
20 mouse 80979 Slc26a5 solute carrier family 26, m... NM_001289788.1 24.5% 27.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1488
ORF length:
1419
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggatcatgct gaagaaaatg aaatccttgc agcaacccag aggtactatg
121tggaaaggcc tatctttagt catccggtcc tccaggaaag actacacaca aaggacaagg
181ttcctgattc cattgcggat aagctgaaac aggcattcac atgtactcct aaaaaaataa
241gaaatatcat ttatatgttc ctacccataa ctaaatggct gccagcatac aaattcaagg
301aatatgtgtt gggtgacttg gtctcaggca taagcacagg ggtgcttcag cttcctcaag
361gcttagcctt tgcaatgctg gcagctgtgc ctccaatatt tggcctgtac tcttcatttt
421accctgttat catgtattgt tttcttggaa cctccagaca catatccata ggtccttttg
481ctgttattag cctgatgatt ggtggtgtag ctgttcgatt agtaccagat gatatagtca
541ttccaggagg agtaaatgca accaatggca cagaggccag agatgccttg agagtgaaag
601tcgccatgtc tgtgacctta ctttcaggaa tcattcagtt ttgcctaggt gtctgtaggt
661ttggatttgt ggccatatat ctcacagagc ctctggtccg tgggtttacc accgcagcag
721ctgtgcatgt cttcacctcc atgttaaaat atctgtttgg agttaaaaca aagcggtaca
781gtggaatctt ttccgtggtg tatagtacag ttgctgtgtt gcagaatgtt aaaaacctca
841acgtgtgttc cctaggcgtc gggctgatgg tttttggttt gctgttgggt ggcaaggagt
901ttaatgagag atttaaagag aaattgccgg cgcctattcc tttagagttc tttgcggtcg
961taatgggaac tggcatttca gctgggttta acttgaaaga atcatacaat gtggatgtcg
1021ttggaacact tcctctaggg ctgctacctc cagccaatcc ggacaccagc ctcttccacc
1081ttgtgtacGT AGATGCCATT GCCATAGCCA TCGTTGGATT TTCAGTGACC ATCTCCATGG
1141CCAAGACCTT AGCAAATAAA CATGGCTACC AGGTTGACGG CAATCAGGAG CTCATTGCCC
1201TGGGACTGTG CAATTCCATT GGCTCACTCT TCCAGACCTT TTCAATTTCA TGCTCCTTGT
1261CTCGAAGCCT TGTTCAGGAG GGAACCGGTG GGAAGACACA GCTTGCAGGT TGTTTGGCCT
1321CATTAATGAT TCTGCTGGTC ATATTAGCAA CTGGATTCCT CTTTGAATCA TTGCCCCAGA
1381CCATCTGGCT TACCACTTTT GTGTCCTCCT TGTTCCTGGG ATTGGACTAT GGTTTGATCA
1441CTGCTGTGAT CATTGCTCTG CTGACTGTGA TTTACAGAAC ACAGAGGTTG CCAACTTTCT
1501TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1561CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1621GTGGAAAGGA CGAACATAAC CGTGCATCCT CATCGCAACG CGTTAAGTCg acaatcaacc
1681tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)