Transcript: Human XM_011516170.3

PREDICTED: Homo sapiens solute carrier family 26 member 5 (SLC26A5), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC26A5 (375611)
Length:
9237
CDS:
1053..3287

Additional Resources:

NCBI RefSeq record:
XM_011516170.3
NBCI Gene record:
SLC26A5 (375611)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516170.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151084 GCCTCTCATGAAGTTCATAAT pLKO.1 3319 3UTR 100% 13.200 18.480 N SLC26A5 n/a
2 TRCN0000157172 GCCATGTCTGTGACCTTACTT pLKO.1 1587 CDS 100% 5.625 7.875 N SLC26A5 n/a
3 TRCN0000154762 GCTGTTCGATTAGTACCAGAT pLKO.1 1494 CDS 100% 4.050 5.670 N SLC26A5 n/a
4 TRCN0000155324 GCGACTTGTATAGCAATGCAT pLKO.1 2698 CDS 100% 3.000 4.200 N SLC26A5 n/a
5 TRCN0000156708 CCAAGCTACAAAGTCCTTGGA pLKO.1 2568 CDS 100% 0.264 0.211 N SLC26A5 n/a
6 TRCN0000414568 ATGTTCCTACCCATAACTAAA pLKO_005 1239 CDS 100% 13.200 9.240 N SLC26A5 n/a
7 TRCN0000157506 GCAGGTTGTTTGGCCTCATTA pLKO.1 2289 CDS 100% 13.200 9.240 N SLC26A5 n/a
8 TRCN0000413075 TTGGATTTGTGGCCATATATC pLKO_005 1645 CDS 100% 13.200 9.240 N SLC26A5 n/a
9 TRCN0000155882 CCATGTCTGTGACCTTACTTT pLKO.1 1588 CDS 100% 5.625 3.938 N SLC26A5 n/a
10 TRCN0000166498 CGCCTGTAATCCCAGTACTTT pLKO.1 5711 3UTR 100% 5.625 2.813 Y MGC13053 n/a
11 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 5787 3UTR 100% 4.950 2.475 Y ORAI2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516170.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13637 pDONR223 100% 63.5% 63.4% None 1311_1406del;1515_2232delinsG n/a
2 ccsbBroad304_13637 pLX_304 0% 63.5% 63.4% V5 1311_1406del;1515_2232delinsG n/a
3 TRCN0000470360 ACATAACCGTGCATCCTCATCGCA pLX_317 28.4% 63.5% 63.4% V5 1311_1406del;1515_2232delinsG n/a
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