Construct: ORF TRCN0000470388

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010387.1_s317c1
Derived from:
ccsbBroadEn_08648
DNA Barcode:
GGCACTGGGCCTCTGGCTAGAACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM39 (56658)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470388
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56658 TRIM39 tripartite motif containing 39 NM_001369521.1 99.8% 100% 435T>C;939T>C
2 human 56658 TRIM39 tripartite motif containing 39 NM_001369522.1 99.8% 100% 435T>C;939T>C
3 human 56658 TRIM39 tripartite motif containing 39 NM_001369523.1 99.8% 100% 435T>C;939T>C
4 human 56658 TRIM39 tripartite motif containing 39 NM_172016.2 99.8% 100% 435T>C;939T>C
5 human 56658 TRIM39 tripartite motif containing 39 NM_021253.4 94% 94.2% 435T>C;804_893del;1029T>C
6 human 202658 TRIM39-RPP21 TRIM39-RPP21 readthrough NM_001199119.1 82.6% 74.1% (many diffs)
7 mouse 79263 Trim39 tripartite motif-containing 39 NM_024468.2 90.4% 97.5% (many diffs)
8 mouse 79263 Trim39 tripartite motif-containing 39 NM_178281.1 90.4% 97.5% (many diffs)
9 mouse 79263 Trim39 tripartite motif-containing 39 XM_006525171.3 88.9% 95.9% (many diffs)
10 mouse 79263 Trim39 tripartite motif-containing 39 XM_006525172.3 47.6% 51% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1530
ORF length:
1464
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agagacaagt ctgttagagg ctggggcctc tgcagcctct acagctgcgg
121ctttggagaa cttacaggtg gaggcgagct gctctgtgtg cctggagtat ctgaaggaac
181ctgtcatcat tgagtgtggg cacaacttct gcaaagcttg catcacccgc tggtgggagg
241acctagagag ggacttccct tgtcctgtct gtcgaaagac atcccgctac cgcagtctcc
301gacctaatcg gcaactaggc agtatggtgg aaattgccaa gcagctccag gccgtcaagc
361ggaagatccg ggatgagagc ctctgccccc aacaccatga ggccctcagc cttttctgtt
421atgaggacca ggaggctgta tgcttgatat gtgcaatttc ccacacccac cgggcccaca
481ccgttgtgcc actggacgac gctacacagg agtacaagga aaaactgcag aagtgtctgg
541agcccctgga acagaagctg caggagatca ctcgctgcaa gtcctctgag gagaagaagc
601ctggtgagct caagagacta gtggaaagtc gccgacagca gatcttgagg gagtttgaag
661agcttcatag gcggctggat gaagagcagc aggtgttgct ttcacgactg gaagaagagg
721aacaggacat tctgcagcga ctccgagaaa atgctgctca ccttggggac aagcgccggg
781acctggccca cttggctgcc gaggtggagg gcaagtgctt acagtcaggc ttcgagatgc
841ttaaggatgt caaaagtacc ctggaaaaat gtgaaaaggt gaagaccatg gaggtgactt
901cagtatccat agagctggaa aagaacttca gcaattttcc ccgacagtac tttgccctaa
961ggaaaatcct taaacagcta attgcggatg tgaccctgga ccccgagaca gctcatccta
1021acctagtcct gtcagaggat cgtaagagcg tcaagttcgt ggagacaaga cTCCGGGATC
1081TCCCTGACAC ACCAAGGCGT TTCACCTTCT ACCCTTGCGT CCTGGCTACT GAGGGTTTCA
1141CCTCAGGTCG ACACTACTGG GAGGTGGAGG TGGGCGACAA GACCCACTGG GCAGTGGGTG
1201TATGCCGGGA CTCCGTGAGC CGAAAGGGCG AGTTGACTCC ACTCCCTGAG ACTGGCTACT
1261GGCGGGTGCG GCTATGGAAT GGGGACAAAT ATGCAGCCAC CACCACACCT TTTACCCCTT
1321TGCACATCAA GGTGAAACCC AAGCGGGTAG GCATATTCCT AGACTATGAG GCCGGCACAC
1381TGTCTTTCTA CAATGTCACA GACCGCTCTC ATATCTACAC CTTCACTGAT ACTTTTACTG
1441AGAAACTTTG GCCCCTCTTC TACCCAGGCA TCCGGGCTGG ACGGAAGAAT GCTGCACCAC
1501TTACCATCAG GCCCCCAACA GATTGGGAGT GCCCAACTTT CTTGTACAAA GTGGTTGATA
1561TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1621CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGGCAC
1681TGGGCCTCTG GCTAGAACCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1741tgaaagatt

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