Construct: ORF TRCN0000470461

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016856.1_s317c1
Derived from:
ccsbBroadEn_00197
DNA Barcode:
TTTGCGGTTGTTCACACACGGAAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MPPED1 (758)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470461
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 758 MPPED1 metallophosphoesterase doma... NM_001044370.2 100% 100%
2 human 758 MPPED1 metallophosphoesterase doma... NM_001362786.1 100% 100%
3 mouse 223726 Mpped1 metallophosphoesterase doma... NM_172610.3 89.9% 98.1% (many diffs)
4 mouse 223726 Mpped1 metallophosphoesterase doma... XM_006520817.3 89.9% 98.1% (many diffs)
5 mouse 223726 Mpped1 metallophosphoesterase doma... XM_006520818.3 89.9% 98.1% (many diffs)
6 mouse 223726 Mpped1 metallophosphoesterase doma... XM_006520819.2 89.9% 98.1% (many diffs)
7 mouse 223726 Mpped1 metallophosphoesterase doma... XM_006520820.3 89.9% 98.1% (many diffs)
8 mouse 223726 Mpped1 metallophosphoesterase doma... XM_017316573.1 89.9% 98.1% (many diffs)
9 mouse 223726 Mpped1 metallophosphoesterase doma... XM_017316572.1 74% 80.8% (many diffs)
10 mouse 223726 Mpped1 metallophosphoesterase doma... XR_384004.2 13% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1044
ORF length:
978
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg gcgctctagg tgggatgcca gcgtcctgaa ggcggaggcc ctggccctcc
121tcccctgcgg cctgggcatg gcattctccc agtcccacgt gatggccgct cggcggcacc
181agcacagccg gctcatcatc gaggtggacg agtacagctc caaccccacc caggccttca
241ccttctacaa catcaaccag ggccgcttcc agccaccgca tgtgcagatg gtggacccgg
301tgcctcacga tgcccccaaa cctccaggct acacccgctt cgtctgcgtc tctgataccc
361actcgaggac ggaccccatc cagatgccgt acggcgacgt gctgatccac gctggggact
421tcactgagct ggggctcccg agcgaggtga agaagttcaa cgagtggctg ggcagcctgc
481cctacgagta caagatcgtg atcgcaggca accacgagct gacctttgac caggagttca
541tggccgacct catcaagcag gacttttact acttcccatc tgtgtcgaag ctgaagccgg
601agaactatga gaatgtgcag tcgctgctga ccaactgcat ctaccttcag gactcggagg
661tcaccgtgcg gggcttccgg atctatggct ccCCATGGCA GCCCTGGTTC TACGGCTGGG
721GCTTCAACCT CCCGCGAGGC CAAGCCCTGC TGGAGAAATG GAACCTCATT CCCGAAGGCG
781TAGACATCCT GATAACCCAT GGACCACCAC TGGGCTTCCT GGACTGGGTC CCCAAGAAGA
841TGCAGCGGGT GGGCTGTGTG GAGCTGCTCA ACACGGTGCA GAGGCGCGTC CAGCCGCGGT
901TACATGTCTT TGGCCACATC CACGAAGGGT ATGGTGTCAT GGCAGATGGG ACGACCACCT
961ATGTGAATGC GTCCGTATGC ACTGTGAACT ACCAGCCCGT GAACCCGCCC ATAGTCATCG
1021ACCTCCCCAC ACCCCGGAAC TCCTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1081AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1141TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT TTGCGGTTGT
1201TCACACACGG AAGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1261att

Download FASTA (ORF) (Full)