Construct: ORF TRCN0000470510
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004807.1_s317c1
- Derived from:
- ccsbBroadEn_07166
- DNA Barcode:
- CGGGCCCGCTCCGTTGCACCGGGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF146 (7705)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470510
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7705 | ZNF146 | zinc finger protein 146 | NM_001099638.1 | 99.8% | 99.6% | 23G>A |
| 2 | human | 7705 | ZNF146 | zinc finger protein 146 | NM_001099639.1 | 99.8% | 99.6% | 23G>A |
| 3 | human | 7705 | ZNF146 | zinc finger protein 146 | NM_007145.2 | 99.8% | 99.6% | 23G>A |
| 4 | human | 7705 | ZNF146 | zinc finger protein 146 | XM_005259214.3 | 99.8% | 99.6% | 23G>A |
| 5 | human | 7705 | ZNF146 | zinc finger protein 146 | XM_017027246.2 | 99.8% | 99.6% | 23G>A |
| 6 | human | 7705 | ZNF146 | zinc finger protein 146 | XM_017027247.2 | 99.8% | 99.6% | 23G>A |
| 7 | human | 339324 | ZNF260 | zinc finger protein 260 | NM_001012756.3 | 59.8% | 57.2% | (many diffs) |
| 8 | human | 339324 | ZNF260 | zinc finger protein 260 | NM_001166036.2 | 59.8% | 57.2% | (many diffs) |
| 9 | human | 339324 | ZNF260 | zinc finger protein 260 | NM_001166037.2 | 59.8% | 57.2% | (many diffs) |
| 10 | human | 339324 | ZNF260 | zinc finger protein 260 | NM_001166038.2 | 59.8% | 57.2% | (many diffs) |
| 11 | human | 339324 | ZNF260 | zinc finger protein 260 | XM_011526897.2 | 59.8% | 57.2% | (many diffs) |
| 12 | human | 339324 | ZNF260 | zinc finger protein 260 | XM_017026741.1 | 59.8% | 57.2% | (many diffs) |
| 13 | mouse | 26465 | Zfp146 | zinc finger protein 146 | NM_011980.3 | 85.7% | 95.2% | (many diffs) |
| 14 | mouse | 26465 | Zfp146 | zinc finger protein 146 | XM_006540008.2 | 85.7% | 95.2% | (many diffs) |
| 15 | mouse | 26465 | Zfp146 | zinc finger protein 146 | XM_006540009.2 | 85.7% | 95.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 945
- ORF length:
- 876
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcacacctc agccagcaga aaatttacag tggggaaaac ccctttgcct 121 gtaaggtatg tggaaaagtc ttcagccaca aatcaaacct cactgagcat gagcattttc 181 acacgagaga gaaacctttt gaatgtaacg agtgtggaaa agcctttagc caaaagcagt 241 atgtcattaa acatcagaac acccatactg gcgagaagct tttcgaatgt aatgaatgtg 301 gaaaatcatt tagccagaag gaaaacctcc ttacgcacca gaaaattcac actggagaaa 361 aaccttttga gtgtaaagat tgcgggaaag ctttcattca gaagtcaaac ctcatcagac 421 accagagaac tcacacagga gagaagccct ttgtatgtaa ggagtgtgga aaaaccttca 481 gtggcaaatc caaccttact gagcatgaga aaatccatat tggagagaag ccttttaaat 541 gtagtgaatg tggaacagcc tttggccaga agaagtacct cataAAACAT CAGAACATTC 601 ACACTGGAGA GAAACCCTAT GAATGTAACG AATGTGGAAA AGCCTTCTCT CAGCGAACAT 661 CACTTATTGT ACATGTGAGG ATTCATTCAG GTGATAAACC TTACGAATGC AATGTTTGTG 721 GAAAAGCCTT CTCTCAGAGC TCATCTCTCA CTGTGCATGT GAGAAGCCAT ACAGGGGAGA 781 AGCCCTATGG TTGTAATGAA TGTGGGAAAG CTTTCTCTCA GTTCTCAACC CTTGCTCTGC 841 ATTTGAGAAT ACACACAGGT AAGAAGCCTT ATCAGTGCAG TGAATGTGGG AAAGCTTTCA 901 GCCAGAAGTC ACACCACATT AGACACCAGA AAATTCATAC TCACTTGCCA ACTTTCTTGT 961 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1021 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCCTTTA TATATCTTGT 1081 GGAAAGGACG ACGGGCCCGC TCCGTTGCAC CGGGGACGCG TTAAGTCgac aatcaacctc 1141 tggattacaa aatttgtgaa agatt