Construct: ORF TRCN0000470594

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016397.1_s317c1
Derived from:
ccsbBroadEn_15450
DNA Barcode:
TAAACACACACACGGATGCCGTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPC (3183)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470594
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077443.1 99.7% 99.3% 632A>G;692A>G
2 human 3183 HNRNPC heterogeneous nuclear ribon... NM_004500.3 99.7% 99.3% 632A>G;692A>G
3 human 3183 HNRNPC heterogeneous nuclear ribon... XM_006720125.3 99.7% 99.3% 632A>G;692A>G
4 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536712.2 99.7% 99.3% 632A>G;692A>G
5 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021252.2 99.7% 99.3% 632A>G;692A>G
6 human 3183 HNRNPC heterogeneous nuclear ribon... XM_017021253.2 99.7% 99.3% 632A>G;692A>G
7 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449558.1 99.7% 99.3% 632A>G;692A>G
8 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449559.1 99.7% 99.3% 632A>G;692A>G
9 human 3183 HNRNPC heterogeneous nuclear ribon... NM_001077442.1 95.5% 95% 317_355del;671A>G;731A>G
10 human 3183 HNRNPC heterogeneous nuclear ribon... NM_031314.2 95.5% 95% 317_355del;671A>G;731A>G
11 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536708.1 95.5% 95% 317_355del;671A>G;731A>G
12 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536709.3 95.5% 95% 317_355del;671A>G;731A>G
13 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536710.2 95.5% 95% 317_355del;671A>G;731A>G
14 human 3183 HNRNPC heterogeneous nuclear ribon... XM_011536711.2 95.5% 95% 317_355del;671A>G;731A>G
15 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449556.1 95.5% 95% 317_355del;671A>G;731A>G
16 human 3183 HNRNPC heterogeneous nuclear ribon... XM_024449557.1 95.5% 95% 317_355del;671A>G;731A>G
17 human 343069 HNRNPCL1 heterogeneous nuclear ribon... NM_001013631.2 94.4% 90.1% (many diffs)
18 human 440563 HNRNPCL2 heterogeneous nuclear ribon... NM_001136561.3 93.2% 87.7% (many diffs)
19 human 649330 HNRNPCL3 heterogeneous nuclear ribon... NM_001146181.2 92.9% 87.7% (many diffs)
20 human 101060301 HNRNPCL4 heterogeneous nuclear ribon... NM_001302551.1 92.8% 87.7% (many diffs)
21 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170983.1 92.5% 96.9% (many diffs)
22 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518578.2 92.5% 96.9% (many diffs)
23 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315857.1 92.5% 96.9% (many diffs)
24 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315858.1 92.5% 96.9% (many diffs)
25 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170984.1 92.1% 96.5% (many diffs)
26 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518581.2 92.1% 96.5% (many diffs)
27 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315859.1 92.1% 96.5% (many diffs)
28 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170981.1 90.3% 94.6% (many diffs)
29 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_001170982.1 90.3% 94.6% (many diffs)
30 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315855.1 90.3% 94.6% (many diffs)
31 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315856.1 90.3% 94.6% (many diffs)
32 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518574.2 88.5% 92.8% (many diffs)
33 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315850.1 88.5% 92.8% (many diffs)
34 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315851.1 88.5% 92.8% (many diffs)
35 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_011244965.2 88.2% 92.5% (many diffs)
36 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315852.1 88.2% 92.5% (many diffs)
37 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315853.1 88.2% 92.5% (many diffs)
38 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315854.1 88.2% 92.5% (many diffs)
39 mouse 15381 Hnrnpc heterogeneous nuclear ribon... NM_016884.3 86.6% 90.7% (many diffs)
40 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518571.3 86.6% 90.7% (many diffs)
41 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_006518572.3 86.6% 90.7% (many diffs)
42 mouse 15381 Hnrnpc heterogeneous nuclear ribon... XM_017315849.1 86.6% 90.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
945
ORF length:
879
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cagcaacgtt accaacaaga cagatcctcg ctccatgaac tcccgtgtat
121tcattgggaa tctcaacact cttgtggtca agaaatctga tgtggaggca atcttttcga
181agtatggcaa aattgtgggc tgctctgttc ataagggctt tgccttcgtt cagtatgtta
241atgagagaaa tgcccgggct gctgtagcag gagaggatgg cagaatgatt gctggccagg
301ttttagatat taacctggct gcagagccaa aagtgaaccg aggaaaagca ggtgtgaaac
361gatctgcagc ggagatgtac ggctcctctt ttgacttgga ctatgacttt caacgggact
421attatgatag gatgtacagt tacccagcac gtgtacctcc tcctcctcct attgctcggg
481ctgtagtgcc ctcgaaacgt cagcgtgtat caggaaacac ttcacgaagg ggcaaaagtg
541gcttcaattc taagagtgga cagcggggaT CTTCCAAGTC TGGAAAGTTG AAAGGAGATG
601ACCTTCAGGC CATTAAGAAG GAGCTGACCC AGATAAAACA AAAAGTGGAT TCTCTCCTGG
661AAAACCTGGA AAAAATTGAA AAGGAACAGA GCAAACGAGC AGTAGAGATG AAGAATGATA
721AGTCAGAAGA GGAGCAGAGC AGCAGCTCCG TGAAGAGAGA TGAGACTAAT GTGAAGATGG
781AGTCTGAGGG GGGTGCAGAT GACTCTGCTG AGGAGGGGGA CCTACTGGAT GATGATGATA
841ATGAAGATCG GGGGGATGAC CAGCTGGAGT TGATCAAGGA TGATGAAAAA GAGGCTGAGG
901AAGGAGAGGA TGACAGAGAC AGCGCCAATG GCGAGGATGA CTCTTACCCA ACTTTCTTGT
961ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1021AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1081GAAAGGACGA TAAACACACA CACGGATGCC GTTAACGCGT TAAGTCgaca atcaacctct
1141ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)