Construct: ORF TRCN0000470601

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007249.1_s317c1
Derived from:
ccsbBroadEn_02040
DNA Barcode:
GAATTGAGCCACAAATCTGGGACA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAE1 (8883)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470601
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8883 NAE1 NEDD8 activating enzyme E1 ... NM_003905.4 100% 100%
2 human 8883 NAE1 NEDD8 activating enzyme E1 ... NM_001286500.1 99.4% 99.4% 156_164delAGGTAACGT
3 human 8883 NAE1 NEDD8 activating enzyme E1 ... NM_001018159.1 97.9% 97% (many diffs)
4 human 8883 NAE1 NEDD8 activating enzyme E1 ... NM_001018160.1 83.3% 83.3% 0_1ins267
5 human 8883 NAE1 NEDD8 activating enzyme E1 ... XM_005256215.1 83.3% 83.3% 0_1ins267
6 mouse 234664 Nae1 NEDD8 activating enzyme E1 ... NM_144931.3 92.5% 97% (many diffs)
7 mouse 234664 Nae1 NEDD8 activating enzyme E1 ... XM_006530884.2 88.1% 92.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1668
ORF length:
1602
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gcagctggga aagctgctca aggagcagaa gtacgaccgg cagctgaggt
121tgtggggtga tcatgggcaa gaggctttag aatctgctca tgtttgccta ataaatgcaa
181cagccacagg aactgaaatt cttaaaaact tggtactacc aggtattggt tcgtttacaa
241ttattgatgg aaatcaggtc agcggagaag atgctggaaa caatttcttc cttcaaagaa
301gcagtatcgg caagaaccga gctgaagctg ccatggaatt cttacaagaa ttaaatagcg
361atgtctctgg aagttttgtg gaagagagtc cagaaaacct tctagacaat gatccctcat
421ttttctgtag gtttactgtt gtagttgcaa ctcagcttcc tgaaagcact tcactacgct
481tagcagatgt cctctggaat tcccagattc ctcttttgat ctgtaggaca tatggactag
541ttggttatat gaggatcatt ataaaagaac atccagtaat agaatctcat ccagataatg
601cattagagga tctacgacta gataagccat ttcctgaact gagagaacat tttcagtcct
661atgatttgga tcatatggaa aaaaaggacc acagtcatac tccatggatt gtgatcatag
721ctaaatattt agcacagtgg tatagtgaaa caaatggacg aatacctaaa acgtataaag
781aaaaagagga cttcagagat ttgattagac aaggaattct aaaaaatgaa aatggggctc
841cagaagatga agagaatttt gaagaagcta ttaaaaatgt gaacacagca ctaaatacaa
901ctcagatccc aagcagtatt gaagatatat ttaatgatga tcgctgcata aatatcacca
961aacagactcc atcattttgg attttagctc gtgccttaaa ggaatttgtg gccaaagagg
1021gtcaaggaaa tttacctgtt cgaggcacaa ttcctgatat gattgcagat tcaggcaaat
1081atataaaact gcaaaacgtt taccgtgaaa aagcaaagaa agatgctgcc gctgtgggta
1141atcatgttgc caaattgctg cagtccattg gccaggcacc agagtccatt tcagagaaag
1201aattaaaatt actctgcagc aattctgcat ttcttcgagt ggtaagatgt cgatccttag
1261ctgaagaata tggtttggat acaattaaca aggatgaaat tatttctagc atggacaatc
1321cagataatga aatagtgttg tacttaatgt tacgggctgt tgatagattt cataaaCAAC
1381AGGGTAGATA TCCAGGAGTA TCTAACTATC AAGTTGAAGA AGATATAGGA AAGTTGAAGT
1441CTTGTCTCAC TGGCTTCCTT CAGGAATATG GTTTATCTGT AATGGTGAAA GATGATTATG
1501TCCACGAATT TTGCCGATAT GGAGCTGCTG AGCCACATAC CATTGCTGCA TTCTTGGGGG
1561GAGCTGCTGC TCAAGAGGTC ATCAAAATAA TCACCAAACA ATTTGTAATT TTTAATAATA
1621CTTACATTTA CAGTGGCATG TCACAAACTT CAGCAACTTT CCAGTTGTAC CCAACTTTCT
1681TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1741CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1801GTGGAAAGGA CGAGAATTGA GCCACAAATC TGGGACAACG CGTTAAGTCg acaatcaacc
1861tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)