Construct: ORF TRCN0000470883
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010370.1_s317c1
- Derived from:
- ccsbBroadEn_10288
- DNA Barcode:
- TTTCCTCAAAGACAACATCGTTAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCAT4 (118425)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470883
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 118425 | PCAT4 | prostate cancer associated ... | NR_026555.1 | 4.8% | 1_37del;140_2091del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 323
- ORF end:
- 425
- ORF length:
- 102
- Sequence:
-
1 TCAGCCGTCG CTTCATGTGA CTCCACGGAG TACCGGGCGC CGTCCAGGCA CCTCGATTAG 61 TTCTCGAGCT TTTGGAGTAC GTCGTCTTTA GGTTGGGGGG AGGGGTTTTA TGCGATGGAG 121 TTTCCCCACA CTGAGTGGGT GGAGACTGAA GTTAGGCCAG CTTGGCACTT GATGTAATTC 181 TCCTTGGAAT TTGCCCTTTT TGAGTTTGGA TCTTGGTTCA TTCTCAAGCC TCAGACAGTG 241 GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT GATCAACAAG 301 TTTGTACAAA AAAGTTGGCA CCATGTGCTG TGAAATCTAC TACCGTTTGC TGGTTTTGAA 361 AATGGAGAAA AAGAGTGAGG AACTGAGAAA CATGGATGGC CTTGGGAACG TGGAAAAGGG 421 TCACTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT 481 CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC 541 TTGGCTTTAT ATATCTTGTG GAAAGGACGA TTTCCTCAAA GACAACATCG TTATACGCGT 601 TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt