Construct: ORF TRCN0000470903

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001920.1_s317c1
Derived from:
ccsbBroadEn_04578
DNA Barcode:
CGTATTGACCCGGATTCTCATTTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPSB4 (92369)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470903
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92369 SPSB4 splA/ryanodine receptor dom... NM_080862.3 100% 100%
2 human 92369 SPSB4 splA/ryanodine receptor dom... XM_017007509.2 84.4% 84.6% 695_698delAAAA;699_700ins124
3 human 92369 SPSB4 splA/ryanodine receptor dom... XR_924216.3 32.7% 1_215del;910_1028del;1154_2498del
4 human 92369 SPSB4 splA/ryanodine receptor dom... XR_924215.3 12.8% (many diffs)
5 mouse 211949 Spsb4 splA/ryanodine receptor dom... NM_145134.3 88% 97.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
885
ORF length:
819
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg ccagaagctc tcggggagcc tcaagtcagt ggaggtgcga gagccggcgc
121tgcggccggc caagcgggag ctgcggggtg cagagcccgg gcggccggcg cggctggacc
181agctgttgga catgccagcg gcggggctgg ctgtgcagct gcggcacgcg tggaaccccg
241aggaccgctc gctcaacgtc ttcgtcaagg acgacgaccg gctcaccttc caccggcacc
301ccgtggccca gagcaccgac ggcatccgcg gcaaggtggg ccacgcccgc ggcctgcacg
361cctggcagat caactggccg gctcggcagc gcggcaccca cgctgtagtt ggtgtggcca
421cggcccgtgc tcccctgcac tccgtgggct acacggcgct ggtaggcagt gacgccgagt
481cgtggggctg ggacctgggc cgcagccgcc tctaccacga cggCAAGAAC CAGCCCGGCG
541TGGCCTACCC GGCCTTTCTG GGGCCCGACG AGGCCTTTGC GCTGCCCGAC TCGCTGCTCG
601TGGTGCTGGA CATGGATGAG GGCACACTCA GCTTCATCGT GGATGGCCAG TACCTGGGCG
661TGGCCTTCCG AGGTCTCAAG GGCAAGAAGC TGTACCCGGT GGTGAGTGCC GTGTGGGGCC
721ACTGTGAAGT CACCATGCGC TACATCAACG GCCTTGACCC CGAGCCCCTG CCACTGATGG
781ACCTGTGCCG GAGATCCATC CGCTCGGCCC TGGGCCGCCA GCGCCTGCAG GACATCAGCT
841CCCTGCCCCT GCCTCAGTCT CTCAAAAACT ATCTGCAGTA CCAGTGCCCA ACTTTCTTGT
901ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
961AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1021GAAAGGACGA CGTATTGACC CGGATTCTCA TTTAACGCGT TAAGTCgaca atcaacctct
1081ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)