Construct: ORF TRCN0000470953
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004046.1_s317c1
- Derived from:
- ccsbBroadEn_15935
- DNA Barcode:
- TCTCCTGAACACTATGAGACCGTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF695 (57116)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470953
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57116 | ZNF695 | zinc finger protein 695 | NM_001204221.2 | 50.3% | 49.4% | 251G>A;260_262delTTTinsCCA;265_516del |
| 2 | human | 57116 | ZNF695 | zinc finger protein 695 | NR_037892.2 | 28.1% | (many diffs) | |
| 3 | human | 100533111 | ZNF670-ZNF695 | ZNF670-ZNF695 readthrough (... | NR_037894.1 | 19.4% | (many diffs) | |
| 4 | human | 57116 | ZNF695 | zinc finger protein 695 | NM_020394.5 | 16.8% | 16.5% | 251G>A;260_262delTTTinsCCA;265_1545del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 239
- ORF end:
- 503
- ORF length:
- 264
- Sequence:
-
1 TCGTCTTTAG GTTGGGGGGA GGGGTTTTAT GCGATGGAGT TTCCCCACAC TGAGTGGGTG 61 GAGACTGAAG TTAGGCCAGC TTGGCACTTG ATGTAATTCT CCTTGGAATT TGCCCTTTTT 121 GAGTTTGGAT CTTGGTTCAT TCTCAAGCCT CAGACAGTGG TTCAAAGTTT TTTTCTTCCA 181 TTTCAGGTGT CGTGAGGCTA GCATCGATTG ATCAACAAGT TTGTACAAAA AAGTTGGCAT 241 GGGACTATTG GCATTCAGGG ATGTGGCTCT AGAATTCTCT CCAGAGGAGT GGGAATGCCT 301 GGACCCAGCT CAGCGGAGTT TGTATAGGGA TGTGATGTTA GAGAACTACA GAAACCTGAT 361 CTCCCTTGGT GAGGATAGCT TCAATATGCA ATTCCTATTT CACAGTCTTG CTATGTCTAA 421 GCCAGAACTG ATCATCTGTC TGGAGGCAAG GAAAGAGCCC TGGAACGTGA ACACAGAGAA 481 GACAGCCAAA CACTCAGCCA TGTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA 541 GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT 601 TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATC TCCTGAACAC 661 TATGAGACCG TAACGCGTTA AGTCgacaat caacctctgg attacaaaat ttgtgaaaga 721 tt