Construct: ORF TRCN0000471018

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002367.1_s317c1
Derived from:
ccsbBroadEn_12183
DNA Barcode:
TCACCTGCGTAGGGTTCCCTTGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SETD5 (55209)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471018
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55209 SETD5 SET domain containing 5 XM_017006783.1 72.5% 72.5% 1_993del;2161_2217del
2 human 55209 SETD5 SET domain containing 5 NM_001292043.2 68.7% 68.7% 1_1260del
3 human 55209 SETD5 SET domain containing 5 NM_001349451.2 68.7% 68.7% 1_1260del
4 human 55209 SETD5 SET domain containing 5 XM_011533932.1 68.4% 68.4% 1_1221del;2389_2445del
5 human 55209 SETD5 SET domain containing 5 XM_011533933.1 68.4% 68.4% 1_1221del;2389_2445del
6 human 55209 SETD5 SET domain containing 5 XM_017006779.1 68.4% 68.4% 1_1221del;2389_2445del
7 human 55209 SETD5 SET domain containing 5 XM_017006780.1 68.4% 68.4% 1_1221del;2389_2445del
8 human 55209 SETD5 SET domain containing 5 XM_017006776.1 67.7% 67.7% 1_1260del;2428_2484del
9 human 55209 SETD5 SET domain containing 5 XM_017006777.1 67.7% 67.7% 1_1260del;2428_2484del
10 human 55209 SETD5 SET domain containing 5 XM_017006778.1 67.7% 67.7% 1_1260del;2428_2484del
11 human 55209 SETD5 SET domain containing 5 XM_024453621.1 67% 67% 1_1308del;2476_2532del
12 human 55209 SETD5 SET domain containing 5 NM_001080517.3 64% 64% 1_1554del
13 human 55209 SETD5 SET domain containing 5 XM_005265303.1 64% 64% 1_1497del;2665_2721del
14 human 55209 SETD5 SET domain containing 5 XM_017006775.1 63.7% 63.7% 1_1575del
15 human 55209 SETD5 SET domain containing 5 XM_011533930.1 63.5% 63.5% 1_1536del;2704_2760del
16 human 55209 SETD5 SET domain containing 5 XM_005265301.1 63.2% 63.2% 1_1611del
17 human 55209 SETD5 SET domain containing 5 XM_017006774.1 63.2% 63.2% 1_1554del;2722_2778del
18 human 55209 SETD5 SET domain containing 5 XM_017006772.1 62.9% 62.9% 1_1632del
19 human 55209 SETD5 SET domain containing 5 XM_017006773.1 62.9% 62.9% 1_1575del;2743_2799del
20 human 55209 SETD5 SET domain containing 5 XM_011533928.1 62.6% 62.6% 1_1593del;2761_2817del
21 human 55209 SETD5 SET domain containing 5 XM_017006771.1 62.4% 62.4% 1_1611del;2779_2835del
22 human 55209 SETD5 SET domain containing 5 XM_011533927.1 62.3% 62.3% 1_1614del;2782_2838del
23 human 55209 SETD5 SET domain containing 5 XM_017006770.1 62.3% 62.3% 1_1671del
24 human 55209 SETD5 SET domain containing 5 XM_024453620.1 62.1% 62.1% 1_1632del;2800_2856del
25 human 55209 SETD5 SET domain containing 5 XM_011533922.1 61.8% 61.8% 1_1650del;2818_2874del
26 human 55209 SETD5 SET domain containing 5 XM_017006768.2 61.8% 61.8% 1_1650del;2818_2874del
27 human 55209 SETD5 SET domain containing 5 XM_011533920.1 61.6% 61.6% 1_1671del;2839_2895del
28 human 55209 SETD5 SET domain containing 5 XM_011533921.2 61.6% 61.6% 1_1671del;2839_2895del
29 human 55209 SETD5 SET domain containing 5 XM_017006767.1 61.6% 61.6% 1_1671del;2839_2895del
30 human 55209 SETD5 SET domain containing 5 XM_017006782.1 48.5% 48.1% (many diffs)
31 human 55209 SETD5 SET domain containing 5 XR_001740195.2 30.4% 1_5840del;6761_6857del;8710_9117del
32 human 55209 SETD5 SET domain containing 5 XM_017006784.1 27.6% 26.9% (many diffs)
33 human 55209 SETD5 SET domain containing 5 XM_017006785.1 18.5% 18.3% (many diffs)
34 human 55209 SETD5 SET domain containing 5 XM_017006786.1 18.1% 17.8% (many diffs)
35 mouse 72895 Setd5 SET domain containing 5 XM_011241485.2 63% 64.3% (many diffs)
36 mouse 72895 Setd5 SET domain containing 5 XM_017321771.1 63% 64.3% (many diffs)
37 mouse 72895 Setd5 SET domain containing 5 XM_017321772.1 63% 64.3% (many diffs)
38 mouse 72895 Setd5 SET domain containing 5 XM_011241484.2 58.9% 60.1% (many diffs)
39 mouse 72895 Setd5 SET domain containing 5 NM_028385.1 58.1% 59.3% (many diffs)
40 mouse 72895 Setd5 SET domain containing 5 XM_017321770.1 57.8% 59% (many diffs)
41 mouse 72895 Setd5 SET domain containing 5 NM_173005.1 57.4% 58.5% (many diffs)
42 mouse 72895 Setd5 SET domain containing 5 XM_011241482.2 57.4% 58.5% (many diffs)
43 mouse 72895 Setd5 SET domain containing 5 XM_006506677.3 57.1% 58.3% (many diffs)
44 mouse 72895 Setd5 SET domain containing 5 XM_011241480.2 57.1% 58.3% (many diffs)
45 mouse 72895 Setd5 SET domain containing 5 XM_017321767.1 57.1% 58.3% (many diffs)
46 mouse 72895 Setd5 SET domain containing 5 XM_017321768.1 57.1% 58.3% (many diffs)
47 mouse 72895 Setd5 SET domain containing 5 XM_017321769.1 57.1% 58.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2838
ORF length:
2772
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca tgcttttgaa aacttagaga aaagaaagaa gcggcgggat cagcccttgg
121aacagagcaa ctctgatgta gagattacta caaccacctc agagactcct gttggtgaag
181agacaaaaac tgaagcccct gaatctgaag ttagcaactc tgtttcaaat gttaccatcc
241caagcacccc acagagtgtt ggtgtgaata cccggaggtc ttcccaagca ggggatattg
301ctgcagaaaa actagtcccc aagccacctc cagcaaagcc ttctaggccc cggccgaaga
361gtcgaatttc tcggtacagg accagttcag cccaaagact aaagcgtcag aagcaggcca
421atgcacagca ggcagaattg tcacaagctg ccttggaaga gggaggaagt aacagtttag
481taactcctac tgaagctgga agtctagaca gttcaggaga aaacaggcca ttaacagggt
541ctgacccaac tgtggtgtca attactggat cccatgtcaa ccgtgctgca tctaaatacc
601ccaaaaccaa aaagtatcta gttacagaat ggttgaatga caaagcagag aagcaagagt
661gccctgttga gtgcccttta cgtatcacaa cggatccaac tgtactggca acgaccctaa
721acatgttacc aggtcttatc cattccccgt taatttgcac cacccccaaa cactacattc
781gctttggctc accctttatc cctgagagac gtcgaaggcc ccttctgcct gatggcacat
841tcagctcctg taagaagcgc tggataaaac aagccttaga agaagggatg actcaaacat
901catctgtacc ccaagagact agaactcagc acctatacca aagcaatgag aatagtagct
961cttctagtat ctgcaaagac aatgcagact tgttgagccc attaaagaaa tggaagtctc
1021gctatctgat ggagcagaat gtcaccaagt tacttcggcc tctgtctcca gtcacaccac
1081cccctcccaa ttcaggctca aagagtcccc agctggccac acctggctca tctcacccag
1141gagaagagga gtgtcgaaat ggatacagcc tcatgttttc accagtcaca tctcttacta
1201ctgctagtcg ctgcaacact cctctacagt ttgagctttg tcaccgaaaa gacctggatt
1261tggcaaaagt aggatacctt gactccaaca ctaacagctg tgctgataga ccttccctac
1321tcaactcagg tcattctgac ctggctcctc atccctccct cggacccact tctgagactg
1381gtttcccaag cagaagtgga gatggacatc agaccctcgt gagaaactca gaccaggcat
1441ttcggacaga gttcaacttg atgtatgcct actccccttt gaatgctatg cctcgagcag
1501atggactgta tcgaggatct cctctagtgg gggataggaa gcctttacat ttggatgggg
1561gatattgttc ccctgcagaa ggattttcca gcagatatga acatggctta atgaaagacc
1621tctctcgtgg atccttgtca cctggtggtg aaagggcctg tgaaggagtc ccatctgccc
1681cccagaaccc accacagagg aaaaaagtat ccctgctgga gtaccgaaaa cggaaacaag
1741aagctaagga aaattctgct ggtgggggag gtgactctgc acagagcaaa agcaagtctg
1801caggagctgg gcaaggcagc agtaactccg tttccgacac tggtgcccat ggtgtgcagg
1861gatcctcagc ccgaactcca tcttcccctc acaaaaaatt ctccccatct cattcctcta
1921tgtcccattt ggaggcggta agcccatcag attccagagg cacttcttca tctcactgca
1981gacctcaaga gaatatcagc agtaggtgga tggttcccac atcagtagaa cgactccgag
2041aaggagggag catccccaag gtcctccgaa gcagcgtgag ggtggcccaa aagggagagc
2101cctctcccac atgggagagt aacatcacag agaaagactc agaccctgca gatggagaag
2161gcccagagac attaagctca gcactctcta aaggagcaac agtttacagc ccttccagat
2221acagctacca gctcctgcag tgtgatagtc ctcggacaga atcacaaagc ctccttcagc
2281agagttcctc ccccttcaga ggacatccta cacagtctcc aggatacagt tatcgaacta
2341ctgcactgag acctggaaac cccccctctc acggttcttc agaatcatcc ctctcttcca
2401cgtcctattc cagccccgcc CACCCTGTGT CCACAGACTC GTTGGCCCCA TTTACGGGGA
2461CACCAGGGTA TTTTAGCAGC CAGCCACATT CTGGAAACAG CACTGGCAGC AATCTTCCAA
2521GGAGGAGCTG CCCTTCTAGT GCTGCTAGCC CTACCCTGCA GGGACCCTCA GACTCGCCAA
2581CCTCAGATTC AGTTTCTCAG TCCAGCACAG GAACTCTGAG TTCCACCTCC TTTCCTCAGA
2641ACTCTAGGTC GTCATTGCCA TCAGACTTAC GGACTATCAG TCTGCCCAGT GCTGGGCAGT
2701CAGCTGTCTA CCAGGCCTCC AGGGTATCTG CGGTTTCCAA TTCACAGCAC TACCCACACC
2761GTGGGAGTGG GGGTGTGCAC CAGTACCGAC TCCAGCCACT GCAAGGGTCA GGAGTCAAGA
2821CTCAGACGGG ACTTTCCTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
2881TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
2941GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCACCTG CGTAGGGTTC
3001CCTTGACACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)