Construct: ORF TRCN0000471077

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004386.1_s317c1
Derived from:
ccsbBroadEn_03882
DNA Barcode:
GCAGGATCGCGCATTTGTCGATGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM3A (60343)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471077
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60343 FAM3A FAM3 metabolism regulating ... NM_001171132.3 100% 100%
2 human 60343 FAM3A FAM3 metabolism regulating ... NM_001282312.2 100% 100%
3 human 60343 FAM3A FAM3 metabolism regulating ... NM_021806.4 100% 100%
4 human 60343 FAM3A FAM3 metabolism regulating ... NM_001363822.2 97% 97% 334_354del
5 human 60343 FAM3A FAM3 metabolism regulating ... XM_006724832.3 96.6% 96.6% 334_357del
6 human 60343 FAM3A FAM3 metabolism regulating ... NM_001171134.2 92.6% 92.6% 333_334ins51
7 human 60343 FAM3A FAM3 metabolism regulating ... XM_005277879.4 92.6% 92.6% 333_334ins51
8 human 60343 FAM3A FAM3 metabolism regulating ... NM_001171133.3 82.8% 81.3% (many diffs)
9 human 60343 FAM3A FAM3 metabolism regulating ... XM_017029700.2 81.3% 77.3% (many diffs)
10 human 60343 FAM3A FAM3 metabolism regulating ... XM_017029701.1 81.3% 77.3% (many diffs)
11 human 60343 FAM3A FAM3 metabolism regulating ... XM_017029702.1 81.3% 77.3% (many diffs)
12 human 60343 FAM3A FAM3 metabolism regulating ... XM_024452419.1 81.3% 77.3% (many diffs)
13 human 60343 FAM3A FAM3 metabolism regulating ... XM_024452420.1 81.3% 77.3% (many diffs)
14 human 60343 FAM3A FAM3 metabolism regulating ... NM_001282311.2 80.4% 80.4% 0_1ins56;72_169del
15 human 60343 FAM3A FAM3 metabolism regulating ... XM_005274716.3 80.4% 80.4% 0_1ins56;72_169del
16 human 60343 FAM3A FAM3 metabolism regulating ... XM_024452416.1 78.3% 78.1% 0_1ins56;72_169del;376_396del
17 human 60343 FAM3A FAM3 metabolism regulating ... XM_024452415.1 78% 77.8% 0_1ins56;72_169del;376_399del
18 human 60343 FAM3A FAM3 metabolism regulating ... XM_006724833.2 73.9% 73.4% 0_1ins56;72_169del;375_376ins51
19 human 60343 FAM3A FAM3 metabolism regulating ... XM_024452418.1 73.9% 73.4% 0_1ins56;72_169del;375_376ins51
20 human 60343 FAM3A FAM3 metabolism regulating ... XR_002958803.1 35.1% (many diffs)
21 human 60343 FAM3A FAM3 metabolism regulating ... XR_002958800.1 34.4% 1_344del;728_1047del;1355_2001del
22 human 60343 FAM3A FAM3 metabolism regulating ... XR_002958801.1 32.5% (many diffs)
23 human 60343 FAM3A FAM3 metabolism regulating ... XR_002958799.1 32% (many diffs)
24 human 60343 FAM3A FAM3 metabolism regulating ... XR_002958798.1 31.2% (many diffs)
25 human 60343 FAM3A FAM3 metabolism regulating ... XR_002958802.1 30.1% (many diffs)
26 mouse 66294 Fam3a family with sequence simila... NM_001313725.1 85.8% 90.8% (many diffs)
27 mouse 66294 Fam3a family with sequence simila... NM_025473.4 85.8% 90.8% (many diffs)
28 mouse 66294 Fam3a family with sequence simila... XM_011247659.2 77.4% 81.9% (many diffs)
29 mouse 66294 Fam3a family with sequence simila... XM_011247660.2 64.1% 66.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
756
ORF length:
690
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag gttggcaggc cctctccgca ttgtggtcct agtcgtcagt gtgggtgtca
121catggatcgt ggtcagcatc ctcctgggtg ggcctggcag tggctttcct cgcatccagc
181aactcttcac cagtccagag agctcggtga ctgcagcgcc acgggccagg aagtacaagt
241gtggcctgcc ccagccgtgt cctgaggagc acctggcctt ccgcgtggtc agcggggccg
301ccaacgtcat tgGGCCCAAG ATCTGCCTCG AGGACAAGAT GCTGATGAGC AGCGTCAAGG
361ACAACGTGGG CCGCGGGCTG AACATCGCCC TGGTGAACGG GGTCAGCGGC GAGCTCATCG
421AGGCCCGGGC CTTTGACATG TGGGCCGGAG ATGTCAACGA CCTGTTGAAG TTTATTCGGC
481CACTGCACGA AGGCACCCTG GTGTTCGTGG CATCCTACGA CGACCCAGCC ACCAAGATGA
541ATGAAGAGAC CAGAAAGCTC TTCAGTGAGC TGGGCAGCAG GAACGCCAAG GAGCTGGCCT
601TCCGGGACAG CTGGGTGTTT GTCGGGGCCA AGGGTGTGCA GAACAAGAGC CCCTTTGAGC
661AGCACGTGAA GAACAGTAAG CACAGCAACA AGTACGAAGG CTGGCCCGAG GCGCTGGAGA
721TGGAAGGCTG TATCCCGCGG AGAAGCACGG CCAGCTACCC AACTTTCTTG TACAAAGTGG
781TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
841CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
901AGCAGGATCG CGCATTTGTC GATGCACGCG TTAAGTCgac aatcaacctc tggattacaa
961aatttgtgaa agatt

Download FASTA (ORF) (Full)

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