Construct: ORF TRCN0000471180

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002197.1_s317c1
Derived from:
ccsbBroadEn_13154
DNA Barcode:
ACCCTAGACTGGACCGGGACCCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AP1S3 (130340)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471180
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 130340 AP1S3 adaptor related protein com... NM_001039569.2 90.9% 87.1% (many diffs)
2 human 130340 AP1S3 adaptor related protein com... XM_011510600.3 63.6% 60.9% (many diffs)
3 human 130340 AP1S3 adaptor related protein com... NR_110905.2 11.4% (many diffs)
4 human 130340 AP1S3 adaptor related protein com... NR_110906.2 8.8% (many diffs)
5 mouse 252903 Ap1s3 adaptor-related protein com... NM_183027.2 82.9% 82.9% (many diffs)
6 mouse 252903 Ap1s3 adaptor-related protein com... XR_373542.1 28% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
558
ORF length:
492
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat acatttcata ttgctcttca gtcgacaagg gaaattacgg ctacagaaat
121ggtacatcac tctccctgat aaagagagga agaagaTCAC CCGGGAAATT GTTCAGATTA
181TTCTCTCCCG TGGTCACAGG ACAAGCAGTT TTGTTGACTG GAAGGAGCTA AAACTTGTTT
241ATAAAAGGTA TGCTAGTTTA TATTTTTGCT GTGCAATAGA AAATCAGGAC AATGAGCTCT
301TGACGCTAGA GATTGTGCAT CGTTACGTGG AGCTGCTGGA CAAATATTTT GGAAATGTCT
361GTGAGCTGGA TATTATCTTT AATTTTGAAA AGGCTTATTT CATCCTGGAC GAGTTTATAA
421TAGGTGGGGA AATTCAGGAA ACATCCAAGA AAATTGCTGT CAAAGCCATT GAAGACTCTG
481ATATGTTACA GGAGAATCGT TTGAGCCCCA GAGGCAGAGA TTGCAGTGAG CCGAGATCAT
541GCCATTGCAC TCTAGCCTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
601TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
661GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAACCCTAG ACTGGACCGG
721GACCCCCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)