Construct: ORF TRCN0000471192
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003148.1_s317c1
- Derived from:
- ccsbBroadEn_11971
- DNA Barcode:
- GGACTCGGTATCTAAATAAGCCCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GMPR2 (51292)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471192
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001351022.2 | 100% | 100% | |
| 2 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001351023.2 | 100% | 100% | |
| 3 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001283022.2 | 95.7% | 95.7% | 1_54del |
| 4 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001283021.2 | 88.2% | 82.5% | (many diffs) |
| 5 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001002000.3 | 85% | 85% | 855_856ins183 |
| 6 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001002001.3 | 85% | 85% | 855_856ins183 |
| 7 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001002002.3 | 85% | 85% | 855_856ins183 |
| 8 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_016576.5 | 81.4% | 81.4% | 1_54del;909_910ins183 |
| 9 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001283023.2 | 78.2% | 78.2% | 205_206ins84;771_772ins183 |
| 10 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001351024.2 | 73.5% | 68% | (many diffs) |
| 11 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001351025.2 | 73.5% | 68% | (many diffs) |
| 12 | human | 51292 | GMPR2 | guanosine monophosphate red... | NM_001351026.2 | 73.5% | 68% | (many diffs) |
| 13 | human | 51292 | GMPR2 | guanosine monophosphate red... | NR_104265.2 | 52.3% | (many diffs) | |
| 14 | mouse | 105446 | Gmpr2 | guanosine monophosphate red... | NM_177992.2 | 75.8% | 80.9% | (many diffs) |
| 15 | mouse | 105446 | Gmpr2 | guanosine monophosphate red... | XM_006518366.1 | 75.8% | 80.9% | (many diffs) |
| 16 | mouse | 105446 | Gmpr2 | guanosine monophosphate red... | XM_011244882.2 | 65.5% | 66.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1293
- ORF length:
- 1227
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc tcatattgac aacgatgtga aactggactt caaggatgtc cttttgaggc 121 ccaaacgcag tacccttaag tctcgaagtg aggtggatct cacaagatcc ttttcatttc 181 ggaactcaaa gcagacatac tctggggttc ccatcattgc tgccaatatg gatactgtgg 241 gcacctttga gatggccaag gttctctgta agttctctct cttcactgct gtccataagc 301 actatagcct cgttcagtgg caagagtttg ctggccagaa tcctgactgt cttgagcatc 361 tggctgccag ctcaggcaca ggctcttctg actttgagca gctggaacag atcctggaag 421 ctattcccca ggtgaagtat atatgcctgg atgtggcaaa tggctactct gaacactttg 481 ttgaatttgt aaaagatgta cggaagcgct tcccccagca caccatcatg gcagggaatg 541 tggtaacagg agagatggta gaagagctca tcctttctgg ggctgacatc atcaaagtgg 601 gaattgggcc aggctctgtg tgtactactc ggaagaaaac tggagtgggg tatccacagc 661 tcagcgcagt gatggagtgt gcagatgctg ctcatggcct caaaggccac atcatttcag 721 atggaggttg cagctgtcct ggggatgtgg ccaaggcttt tggggcagga gctgacttcg 781 tgatgctggg tggcatgctg gctgggcaca gtgagtcagg tggtgagctc atcgagaggg 841 atggcaagaa gtacaagctc ttctatggaa tgagttctga aatggCCATG AAGAAGTATG 901 CTGGGGGCGT GGCTGAGTAC AGGTATGTGT GGAGGCCCAG GAGCTTAGTA ATAGTATGGA 961 GGCAGAACTC ATGGCTGCTG AGAGGGGGAT GGTACAGTTC TCAGAGAAGC ATGGTGAACC 1021 GGGGCTCAAT GCTAGGGTCT GTGGAAAAGT CCCTGGGCTT AAGGAATCCA GAAGGAGAAG 1081 ATAATAAAGT TTTTCCTACT TTAAGAGCCT CAGAGGGAAA GACAGTGGAA GTTCCTTTTA 1141 AAGGAGATGT GGAACATACC ATCCGAGACA TCCTAGGAGG GATCCGCTCT ACGTGTACCT 1201 ATGTGGGAGC AGCTAAGCTC AAAGAGTTGA GCAGGAGAAC TACCTTCATC CGAGTCACCC 1261 AGCAGGTGAA TCCAATCTTC AGTGAGGCGT GCTACCCAAC TTTCTTGTAC AAAGTGGTTG 1321 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1381 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGG 1441 ACTCGGTATC TAAATAAGCC CCACGCGTTA AGTCgacaat caacctctgg attacaaaat 1501 ttgtgaaaga tt