Construct: ORF TRCN0000471219
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010193.1_s317c1
- Derived from:
- ccsbBroadEn_15936
- DNA Barcode:
- TTCTAAAATCCCTGGAGTTCTTAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF695 (57116)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471219
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57116 | ZNF695 | zinc finger protein 695 | NM_001204221.2 | 75.5% | 74.4% | (many diffs) |
| 2 | human | 57116 | ZNF695 | zinc finger protein 695 | NR_037892.2 | 43% | (many diffs) | |
| 3 | human | 100533111 | ZNF670-ZNF695 | ZNF670-ZNF695 readthrough (... | NR_037894.1 | 31.2% | (many diffs) | |
| 4 | human | 57116 | ZNF695 | zinc finger protein 695 | NM_020394.5 | 25.4% | 25% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 465
- ORF length:
- 399
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg taCAAAAAAG 61 TTGGCATGGG ACTATTGGCA TTCAGGGATG TGGCTCTAGA ATTCTCTCCA GAGGAGTGGG 121 AATGCCTGGA CCCAGCTCAG CGGAGTTTGT ATAGGGATGT GATGTTAGAG AACTACAGAA 181 ACCTGATCTC CCTTGGTGAG GATAGCTTCA ATATGCAATT CCTATTTCAC AGTCTTGCTA 241 TGTCTAAGCC AGAACTGATC ATCTGTCTGG AGGCAAGGAA AGAGCCCTGG AACGTGAACA 301 CAGAGAAGAC AGCCAAACAC TCAGCTTTGT CTTCTTATCT TACTGAAGAC ATTTTGCCAG 361 AGCAGGGCCT GCAAGTTTCA TTCCAAAAAG TGATGCTGAG AAGATATGAA AGATGTTGTC 421 TTGAGAAATT ACGCTTAAGG AATGACTGGG AAATTGTGGC CATGTGCCCA ACTTTCTTGT 481 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 541 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 601 GAAAGGACGA TTCTAAAATC CCTGGAGTTC TTATACGCGT TAAGTCgaca atcaacctct 661 ggattacaaa atttgtgaaa gatt