Construct: ORF TRCN0000471232

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017392.1_s317c1
Derived from:
ccsbBroadEn_01853
DNA Barcode:
TAGAAGACATCCAAGCTTTATAAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TUSC3 (7991)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471232
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7991 TUSC3 tumor suppressor candidate 3 NM_178234.2 100% 100%
2 human 7991 TUSC3 tumor suppressor candidate 3 NM_001356429.2 98.5% 98.8% (many diffs)
3 human 7991 TUSC3 tumor suppressor candidate 3 NM_006765.4 98.5% 98.8% (many diffs)
4 human 7991 TUSC3 tumor suppressor candidate 3 XM_017013861.2 82.5% 82.7% (many diffs)
5 human 7991 TUSC3 tumor suppressor candidate 3 XM_011544651.3 80.5% 79.6% (many diffs)
6 mouse 80286 Tusc3 tumor suppressor candidate 3 NM_030254.3 90.7% 98.5% (many diffs)
7 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313023.1 89.5% 97.7% (many diffs)
8 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313025.1 82.3% 89.9% (many diffs)
9 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313024.1 81.1% 89% (many diffs)
10 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313027.1 78.5% 85% (many diffs)
11 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313026.1 77.3% 84.1% (many diffs)
12 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313030.1 76.5% 82.9% (many diffs)
13 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313028.1 75.3% 82.1% (many diffs)
14 mouse 80286 Tusc3 tumor suppressor candidate 3 XM_017313029.1 75.3% 82.1% (many diffs)
15 mouse 80286 Tusc3 tumor suppressor candidate 3 XR_001778489.1 36.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1107
ORF length:
1041
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg ggcccggggc gctccttcac gccgtaggca agcggggcgg cggctgcggt
121acctgcccac cgggagcttt cccttccttc tcctgctgct gctgctctgc atccagctcg
181ggggaggaca gaagaaaaag gagaatcttt tagctgaaaa agtagagcag ctgatggaat
241ggagttccag acgctcaatc ttccgaatga atggtgataa attccgaaaa tttataaagg
301caccacctcg aaactattcc atgattgtta tgttcactgc tcttcagcct cagcggcagt
361gttctgtgtg caggcaagct aatgaagaat atcaaatact ggcgaactcc tggcgctatt
421catctgcttt ttgtaacaag ctcttcttca gtatggtgga ctatgatgag gggacagacg
481tttttcagca gctcaacatg aactctgctc ctacattcat gcattttcct ccaaaaggca
541gacctaagag agctgatact tttgacctcc aaagaattgg atttgcagct gagcaactag
601caaagtggat tgctgacaga acggatgttc atattcgggt tttcagacca cccaactact
661ctggtaccat tgctttggcc ctgttagtgt cgcttgttgg aggtttgctt tatttgagaa
721ggaacaactt ggagttcatc tataacaaga ctggttgggc catggtgtct ctgtgtatag
781tctttgctat gacttctggc cagatgtgga accatatccg tggacctcca tatgctcata
841agaacccaca caatggacaa gtgagctaca ttcatgggag cagccaggct cagtttgtgg
901cagaatcaca CATTATTCTG GTACTGAATG CCGCTATCAC CATGGGGATG GTTCTTCTAA
961ATGAAGCAGC AACTTCGAAA GGCGATGTTG GAAAAAGACG GATAATTTGC CTAGTGGGAT
1021TGGGCCTGGT GGTCTTCTTC TTCAGTTTTC TACTTTCAAT ATTTCGTTCC AAGTACCACG
1081GCTATCCTTA TAGCTTTTTA ATTAAATGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
1141GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1201AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATAGAAGAC
1261ATCCAAGCTT TATAAAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1321aagatt

Download FASTA (ORF) (Full)