Construct: ORF TRCN0000471361
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008026.1_s317c1
- Derived from:
- ccsbBroadEn_12874
- DNA Barcode:
- TGATAAGCCGGCACACGCCACCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATAD1 (84896)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471361
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84896 | ATAD1 | ATPase family AAA domain co... | NM_001321969.1 | 62.3% | 62.3% | 1_273del |
| 2 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_017016849.1 | 62.3% | 62.3% | 1_273del |
| 3 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_017016850.2 | 62.3% | 62.3% | 1_273del |
| 4 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_024448242.1 | 62.3% | 62.3% | 1_273del |
| 5 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_011540302.1 | 49.8% | 49.8% | 1_456del |
| 6 | human | 84896 | ATAD1 | ATPase family AAA domain co... | NM_001321967.1 | 41.8% | 41.8% | 1_630del |
| 7 | human | 84896 | ATAD1 | ATPase family AAA domain co... | NM_032810.3 | 41.8% | 41.8% | 1_630del |
| 8 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_005270252.5 | 41.8% | 41.8% | 1_630del |
| 9 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_017016847.2 | 41.8% | 41.8% | 1_630del |
| 10 | human | 84896 | ATAD1 | ATPase family AAA domain co... | NM_001321968.1 | 33.5% | 33.5% | 1_630del;690_691ins90 |
| 11 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_017016848.1 | 33.5% | 33.5% | 1_630del;690_691ins90 |
| 12 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XM_011540303.3 | 21.8% | 18.3% | (many diffs) |
| 13 | human | 84896 | ATAD1 | ATPase family AAA domain co... | XR_001747245.2 | 16.1% | (many diffs) | |
| 14 | human | 84896 | ATAD1 | ATPase family AAA domain co... | NR_135914.1 | 10.2% | 1_708del;910_996del;1249_4426del | |
| 15 | mouse | 67979 | Atad1 | ATPase family, AAA domain c... | NM_026487.3 | 38.4% | 41.8% | (many diffs) |
| 16 | mouse | 67979 | Atad1 | ATPase family, AAA domain c... | XM_006527313.2 | 38.4% | 41.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 519
- ORF length:
- 453
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttGGCATGAT GAAAGCTCAG TTTATGAGTC TCTGGGATGG ATTGGATACT GATCACAGCT 121 GCCAGGTCAT AGTAATGGGA GCTACCAATC GTCCTCAGGA CCTTGACTCG GCTATAATGA 181 GAAGAATGCC TACAAGATTT CATATCAACC AGCCTGCTTT AAAACAGAGA GAAGCAATCC 241 TGAAACTCAT CTTGAAAAAT GAAAATGTGG ATAGGCATGT AGACCTGCTA GAAGTTGCCC 301 AGGAAACTGA TGGGTTTTCA GGAAGTGACC TAAAAGAGAT GTGTCGAGAT GCTGCCCTCC 361 TCTGTGTTAG AGAATATGTT AATTCTACAT CAGAAGAAAG CCATGACGAA GATGAAATTC 421 GGCCTGTTCA ACAGCAGGAC CTGCATCGGG CAATTGAAAA GATGAAGAAA TCAAAGGATG 481 CAGCATTTCA GAATGTTTTA ACACATGTTT GTTTAGATTA CCCAACTTTC TTGTACAAAG 541 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 601 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 661 ACGATGATAA GCCGGCACAC GCCACCCTAC GCGTTAAGTC gacaatcaac ctctggatta 721 caaaatttgt gaaagatt