Construct: ORF TRCN0000471373

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010008.1_s317c1
Derived from:
ccsbBroadEn_11427
DNA Barcode:
TTCTGGATGCTTGTGCCGGAGCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FCHSD2 (9873)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471373
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9873 FCHSD2 FCH and double SH3 domains 2 XM_011545410.2 72% 71.6% (many diffs)
2 human 9873 FCHSD2 FCH and double SH3 domains 2 XM_011545409.1 71.6% 71.2% (many diffs)
3 human 9873 FCHSD2 FCH and double SH3 domains 2 XM_017018632.1 71.6% 71.2% (many diffs)
4 human 9873 FCHSD2 FCH and double SH3 domains 2 NM_014824.3 69.5% 69.1% (many diffs)
5 human 9873 FCHSD2 FCH and double SH3 domains 2 XR_001748055.1 31.7% (many diffs)
6 mouse 207278 Fchsd2 FCH and double SH3 domains 2 NM_001146010.1 64.5% 67.4% (many diffs)
7 mouse 207278 Fchsd2 FCH and double SH3 domains 2 XM_006507517.3 63.9% 67.2% (many diffs)
8 mouse 207278 Fchsd2 FCH and double SH3 domains 2 NM_199012.2 62.5% 65.3% (many diffs)
9 mouse 207278 Fchsd2 FCH and double SH3 domains 2 XM_006507518.2 53.6% 56.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1611
ORF length:
1545
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca gaagttggct agtcaatacc tgaagagaga ttggcctgga gtaaaagctg
121atgatcggaa tgattacagg agcatgtatc ccgtttggaa atcttttctc gagggaacaa
181tgcaggtagc ccagtctcgg atgaatatat gtgaaaacta taaaaacttc atttctgagc
241ctgcaaggac agtgagaagc ttaaaagaac agcaactaaa aaggtgtgtg gaccagttga
301caaagatcca aactgaatta caagagacag tgaaagattt agctaaaggc aaaaagaaat
361actttgagac tgaacagatg gctcatgcag tacgagagaa agctgacatc gaggcaaaat
421ctaaacttag tctttttcaa tcaagaatca gtttacagaa ggcaagtgta aagttaaaag
481cccggcgatc tgagtgtaat tccaaagcta cccacgcaag gaatgattat cttcttaccc
541tagcggcagc aaatgcacat caggatcgct actatcaaac agatttagtt aacattatga
601aggctcttga tggaaatgtg tatgatcatc tcaaggatta tttaatagcc ttcagccgga
661ctgagctaga aacatgccaa gctgtgcaga acacattcca gtttttatta gaaaactcca
721gcaaggtggt ccgggactac aatcttcagc tgtttttgca agaaaacgct gtatttcaca
781aaccccagcc cttccagttc cagccttgtg acagtgatac tagccgacag ttagaatcag
841aaactgggac cacagaggag cacagtctaa ataaggaagc tcgaaaatgg gccacacgtg
901tggcacgtga gcataaaaac attgttcacc aacaacgggt tctaaatgat ctggagtgtc
961atggagctgc tgtatcagaa caaagccgag cagagctaga acagaaaata gatgaagcta
1021gagaaaatat tcgtaaagca gagataatta aattgaaagc tgaagcccgg ttggacctgc
1081taaagcagat tggtgtttct gtggacacat ggctaaagag tgccatgaac caagtaatgg
1141aagaactgga aaatgagcga tgggcccgcc ctccTGCAGT GACCAGTAAT GGCACTTTAC
1201ACTCGCTTAA TGCAGATACC GAAAGAGAAG AAGGCGAAGA GTTTGAAGAT AACATGGATG
1261TTTTCGATGA CAGCAGTTCC AGCCCTTCTG GCACCTTAAG AAATTATCCA CTCACCTGCA
1321AAGTTGTTTA TTCCTACAAG GCTTCTCAAC CAGATGAGTT GACCATTGAG GAACATGAGG
1381TGTTAGAAGT GATTGAAGAT GGAGATATGG AAGACTGGGT AAAGGCTCGA AATAAAGTTG
1441GCCAAGTGGG TTATGTGCCA GAAAAGTACC TACAGTTTCC CACCTCGAAC AGCCTCCTGA
1501GCATGCTGCA GTCCCTGGCC GCTTTGGACA GTCGGTCACA CACGTCCAGC AATTCCACGG
1561AAGCAGAACT CGTTTCAGGC AGCCTCAACG GAGATGCCAG TGGTAAAGAC TGCCCAACTT
1621TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1681CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1741CTTGTGGAAA GGACGATTCT GGATGCTTGT GCCGGAGCAA ACGCGTTAAG TCgacaatca
1801acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)