Construct: ORF TRCN0000471384
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008622.1_s317c1
- Derived from:
- ccsbBroadEn_07146
- DNA Barcode:
- AGCCGGTTGGCAACCTCGTACTTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF3 (7551)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471384
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278284.2 | 99.8% | 99.5% | 427T>N;464T>N |
| 2 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278287.2 | 99.8% | 99.5% | 427T>N;464T>N |
| 3 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278290.1 | 99.8% | 99.5% | 427T>N;464T>N |
| 4 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001318135.2 | 99.8% | 99.5% | 427T>N;464T>N |
| 5 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371211.1 | 99.8% | 99.5% | 427T>N;464T>N |
| 6 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371212.1 | 99.8% | 99.5% | 427T>N;464T>N |
| 7 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371213.1 | 99.8% | 99.5% | 427T>N;464T>N |
| 8 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371214.1 | 99.8% | 99.5% | 427T>N;464T>N |
| 9 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_032924.5 | 99.8% | 99.5% | 427T>N;464T>N |
| 10 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001362776.2 | 98.7% | 98.4% | 142_156del;442T>N;479T>N |
| 11 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446919.1 | 98.7% | 98.4% | 142_156del;442T>N;479T>N |
| 12 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446920.1 | 98.7% | 98.4% | 142_156del;442T>N;479T>N |
| 13 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446921.1 | 98.7% | 98.4% | 142_156del;442T>N;479T>N |
| 14 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001318136.2 | 92.1% | 88.3% | (many diffs) |
| 15 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001362775.2 | 92.1% | 88.3% | (many diffs) |
| 16 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371217.1 | 92.1% | 88.3% | (many diffs) |
| 17 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446924.1 | 92.1% | 88.3% | (many diffs) |
| 18 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278291.2 | 91.7% | 91.4% | 0_1ins108;319T>N;356T>N |
| 19 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001278292.2 | 91.7% | 91.4% | 0_1ins108;319T>N;356T>N |
| 20 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001362777.2 | 91.7% | 91.4% | 0_1ins108;319T>N;356T>N |
| 21 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371215.1 | 91.7% | 91.4% | 0_1ins108;319T>N;356T>N |
| 22 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371216.1 | 91.7% | 91.4% | 0_1ins108;319T>N;356T>N |
| 23 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446925.1 | 90.7% | 90.4% | (many diffs) |
| 24 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446926.1 | 90.7% | 90.4% | (many diffs) |
| 25 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446927.1 | 90.7% | 90.4% | (many diffs) |
| 26 | human | 7551 | ZNF3 | zinc finger protein 3 | XM_024446928.1 | 90.7% | 90.4% | (many diffs) |
| 27 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371218.1 | 82.1% | 81.8% | 0_1ins237;190T>N;227T>N |
| 28 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001371210.1 | 26.1% | 21.2% | (many diffs) |
| 29 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_017715.4 | 26.1% | 21.2% | (many diffs) |
| 30 | human | 7551 | ZNF3 | zinc finger protein 3 | NM_001318137.2 | 18.2% | 13.1% | (many diffs) |
| 31 | mouse | 56314 | Zfp113 | zinc finger protein 113 | NM_019747.4 | 83.8% | 82.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1404
- ORF length:
- 1338
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga aactcaggct gatctcgtat ctcaggaacc tcaggccctg cttgacagtg 121 ctcttccttc aaaagttcct gccttttccg acaaggacag cctgggggat gagatgttgg 181 cggctgcgct cctaaaggcc aagtcccagg agctggtaac ctttgaggat gtagctgtgt 241 acttcatccg gaaggagtgg aagcgtttgg aacctgctca gagggacctc tatagagatg 301 tgatgctgga gaattacggg aatgtgttct cactggatcg tgagaccagg actgaaaatg 361 atcaagaaat ttctgaagac acaagatcac atggggtcct actgggaaga tttcaaaagg 421 atatttctca gggtctcaag tttaaagaag cctatgaacg agaagtcagt ctgaaaaggc 481 cgctggggaa cncccctgga gaaagactga acaggaaaat gccagattnt ggtcaagtga 541 cagttgagga gaagctaacc cccaggggag agagaagcga gaaatataat gattttggga 601 acagcttcac tgtgaattcc aaccttatct cacatcagag actccccgtg ggagacagac 661 cccataagtg tgatgaatgt agcaagagct ttaatcgaac ttcagacctt attcaacatc 721 agagaatcca cactggggaa aagccctatg aatgtaatga gtgtgggaag gccttcagcc 781 agagctcaca ccttattcag catcagagaa tccacactgg ggaaaaacct tatgaatgta 841 gtgattgtgg gaaaaccttc agctgtagct ctgccctcat tctgcatcgg aggatccaca 901 cgggggagaa accctatgaa tgtaatgagt gtgggaagac cttcagctgg agctccaccc 961 TCACCCACCA TCAGAGAATC CACACTGGTG AGAAACCCTA CGCCTGCAAT GAATGTGGGA 1021 AGGCCTTCAG CAGGAGCTCA ACCCTTATTC ACCATCAGAG AATCCACACT GGAGAAAAAC 1081 CCTATGAATG TAATGAATGT GGGAAAGCCT TCAGCCAGAG CTCACACCTC TATCAGCACC 1141 AGAGAATCCA CACTGGAGAG AAGCCCTACG AATGTATGGA ATGTGGAGGA AAGTTTACCT 1201 ACAGTTCAGG CCTTATTCAG CATCAAAGAA TCCACACCGG GGAGAACCCC TATGAATGTA 1261 GTGAGTGTGG GAAAGCCTTC AGGTACAGCT CGGCTCTTGT TCGCCATCAG AGAATTCACA 1321 CTGGAGAGAA GCCTTTGAAT GGGATCGGCA TGAGCAAAAG CTCCCTCAGA GTTACGACCG 1381 AGTTAAATAT CAGAGAGTCC ACGTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1441 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1501 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA GCCGGTTGGC 1561 AACCTCGTAC TTAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1621 att