Construct: ORF TRCN0000471426

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003962.1_s317c1
Derived from:
ccsbBroadEn_10741
DNA Barcode:
AGATATAACTATTCGACCGTACTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COL8A2 (1296)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471426
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1296 COL8A2 collagen type VIII alpha 2 ... NM_005202.4 60.7% 60.7% 769_1596del
2 human 1296 COL8A2 collagen type VIII alpha 2 ... XM_005270477.3 54.7% 54.7% 1_231del;1000_1827del
3 human 1296 COL8A2 collagen type VIII alpha 2 ... NM_001294347.2 51.4% 51.4% 0_1ins195;574_1401del
4 mouse 329941 Col8a2 collagen, type VIII, alpha 2 NM_199473.2 53.2% 57.6% (many diffs)
5 mouse 329941 Col8a2 collagen, type VIII, alpha 2 XM_017320266.1 52% 56.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1350
ORF length:
1281
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctggggact ctgacacccc tgtcttcgct gctgctgctg ctactggtgc
121tggtgctggg gtgtgggccg cgggcgtcct ctggtggcgg ggccggtggg gcggcgggct
181atgccccagt gaagtacatc cagcccatgc agaaaggacc tgtgggaccg cccttccgtg
241agggcaaagg ccagtacctg gaaatgcctc taccgctgct gccgatggac ctgaagggag
301agcccggccc ccctgggaag cccgggcctc ggggtccccc tggcccccct ggcttcccag
361gaaaaccagg catgggaaag ccaggactcc atgggcagcc tggccctgct gggccccctg
421gcttctcccg gatgggcaag gctggtcccc cagggctccc tggcaaggtc gggccaccag
481ggcagccggg gcttcggggg gagccaggaa tacgagggga ccagggcctc cggggacccc
541caggaccccc tggcctcccg ggcccctcag gcattactat ccctggaaaa ccaggtgccc
601aaggggtgcc agggccccca ggattccagg gggaaccagg gccccagggg gagcctgggc
661ccccaggtga tcgaggcctc aagggggata atggagtggg ccagcccggg ctgcctgggg
721ccccagggca ggggggtgcc cccggccccc ccggcctccc tggtccagct ggcttaggca
781aacctggttt ggatgggctt cctggggccc caggagacaa gggtgagtct gggcctcctg
841gggccttcga tgagactggc atcgcaggct tgcacctgcc caacggcggt gtggagggtg
901ccgtgctggg caaggggggC AAGCCACAGT TTGGGCTGGG CGAGCTGTCT GCCCATGCCA
961CACCGGCCTT CACTGCGGTG CTCACCTCGC CCTTCCCCGC CTCGGGCATG CCCGTGAAAT
1021TTGACCGGAC TCTCTACAAT GGCCACAGCG GCTACAACCC AGCCACTGGC ATCTTCACCT
1081GCCCTGTGGG CGGCGTCTAC TACTTTGCTT ACCATGTGCA CGTCAAGGGC ACCAACGTGT
1141GGGTGGCCCT GTACAAGAAC AACGTGCCGG CCACCTATAC CTACGATGAG TACAAGAAGG
1201GCTACCTGGA CCAGGCATCT GGTGGGGCCG TGCTCCAGCT GCGGCCCAAC GACCAGGTCT
1261GGGTGCAGAT GCCGTCGGAC CAGGCCAACG GCCTCTACTC CACGGAGTAC ATCCACTCCT
1321CCTTTTCAGG ATTCTTGCTC TGCCCCACAT TGCCAACTTT CTTGTACAAA GTGGTTGATA
1381TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1441CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAGATA
1501TAACTATTCG ACCGTACTCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1561tgaaagatt

Download FASTA (ORF) (Full)