Construct: ORF TRCN0000471476
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012454.1_s317c1
- Derived from:
- ccsbBroadEn_11147
- DNA Barcode:
- TCACTGGTGAATTAAAAGGGCCCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNAPC3 (6619)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471476
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NM_001369651.2 | 74.7% | 74.5% | 758A>T;760_1014del |
| 2 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NM_001369650.2 | 70.9% | 70.7% | 758A>T;760_1068del |
| 3 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NM_001369648.2 | 67.5% | 67.3% | 758A>T;760_1122del |
| 4 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NM_001369647.2 | 65.3% | 63% | (many diffs) |
| 5 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NM_001369649.2 | 63.5% | 49.1% | (many diffs) |
| 6 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NM_001039697.1 | 61.4% | 61.3% | 758A>T;760_1233del |
| 7 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | XM_017015056.2 | 61.4% | 61.3% | 758A>T;760_1233del |
| 8 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161441.1 | 28.4% | (many diffs) | |
| 9 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161445.1 | 26.3% | 1_4delGAAC;762A>T;764_2878del | |
| 10 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161433.2 | 23.5% | 1_4delGAAC;762A>T;764_3214del | |
| 11 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161449.2 | 14.2% | (many diffs) | |
| 12 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161442.2 | 14.1% | (many diffs) | |
| 13 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161448.2 | 13.8% | (many diffs) | |
| 14 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161446.2 | 13.7% | (many diffs) | |
| 15 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161436.2 | 13.1% | (many diffs) | |
| 16 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161440.2 | 11.4% | (many diffs) | |
| 17 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161450.2 | 11.4% | (many diffs) | |
| 18 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161439.2 | 11.4% | 1_4delGAAC;762A>T;764_6627del | |
| 19 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161438.2 | 11.2% | (many diffs) | |
| 20 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161444.2 | 11.2% | (many diffs) | |
| 21 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161435.2 | 11.1% | 1_4delGAAC;762A>T;764_6792del | |
| 22 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161447.2 | 11.1% | (many diffs) | |
| 23 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161443.2 | 10.6% | (many diffs) | |
| 24 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161437.2 | 10.5% | (many diffs) | |
| 25 | human | 6619 | SNAPC3 | small nuclear RNA activatin... | NR_161434.2 | 9.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 825
- ORF length:
- 759
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc tgaaggaagc cgaggtggcc ctacgtgtag cggggtgggt ggcaggcagg 121 acccagtctc cggcagtggc ggctgcaact ttccagagta tgagcttccc gagctaaata 181 cgcgcgcttt ccatgtgggc gcctttgggg agctgtggcg gggccgtctg cgcggggccg 241 gggacttgtc gctgagggag ccgccggcat ccgctctgcc tgggagccag gcagctgacT 301 CCGACCGGGA GGATGCCGCG GTGGCCAGGG ATCTGGACTG CAGCCTGGAG GCGGCGGCTG 361 AGCTGAGGGC GGTGTGCGGC CTTGATAAAC TGAAATGCCT TGAGGACGGT GAGGATCCAG 421 AAGTCATTCC GGAGAATACT GACCTGGTGA CTTTGGGGGT TAGAAAAAGG TTCTTGGAAC 481 ATCGGGAAGA AACCATTACA ATAGATCGAG CCTGCAGACA AGAAACATTC GTTTATGAGA 541 TGGAGTCACA TGCCATAGGA AAAAAGCCTG AAAATTCAGC AGACATGATT GAAGAAGGGG 601 AGCTTATCCT ATCTGTGAAT ATCTTGTACC CTGTTATATT TCATAAGCAC AAAGAACACA 661 AACCATACCA AACAATGCTG GTGTTGGGCA GTCAAAAACT CACACAACTG AGGGATTCAA 721 TTCGATGTGT CAGTGACCTC CAGATTGGTG GTGAATTCAG CAACACTCCT GACCAAGCCC 781 CTGAGCACAT CAGCAAAGAC CTATACAAAT CAGCCTTCTT TTTTTGCCCA ACTTTCTTGT 841 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 901 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 961 GAAAGGACGA TCACTGGTGA ATTAAAAGGG CCCCACGCGT TAAGTCgaca atcaacctct 1021 ggattacaaa atttgtgaaa gatt