Construct: ORF TRCN0000471487
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007631.1_s317c1
- Derived from:
- ccsbBroadEn_13408
- DNA Barcode:
- CTCACCTTCCCTTAGCAATACTTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC37A2 (219855)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471487
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219855 | SLC37A2 | solute carrier family 37 me... | NM_001145290.2 | 25% | 25.1% | 1_1125del;1245T>C |
| 2 | human | 219855 | SLC37A2 | solute carrier family 37 me... | NM_198277.3 | 24.4% | 24.1% | (many diffs) |
| 3 | human | 219855 | SLC37A2 | solute carrier family 37 me... | XR_001747788.1 | 13.3% | 1_1340del;1460T>C;1719_2822del | |
| 4 | mouse | 56857 | Slc37a2 | solute carrier family 37 (g... | NM_020258.4 | 21.7% | 23.1% | (many diffs) |
| 5 | mouse | 56857 | Slc37a2 | solute carrier family 37 (g... | NM_001145960.1 | 21.2% | 22.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 444
- ORF length:
- 378
- Sequence:
-
1 tcttcCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG 61 TTGGCATGTT CCTGTACAAC TACATTGGCC AGGACGGGAT TGCCAGCTCC ATAGTGATGC 121 TGATCATCTG TGGGGGCCTG GTCAATGGCC CATACGCGCT CATCACCACT GCTGTCTCTG 181 CTGACCTGGG GACTCACAAG AGCCTGAAGG GCAACGCCAA AGCCCTGTCC ACGGTCACGG 241 CCATCATTGA CGGCACCGGC TCCATAGGTG CGGCTCTGGG GCCTCTGCTG GCTGGGCTCA 301 TCTCCCCCAC GGGCTGGAAC AATGTCTTCT ACATGCTCAT CTCTGCCGAC GTCCTAGCCT 361 GCTTGCTCCT TTGCCGGTTA GTATACAAAG AGATCTTGGC CTGGAAGGTG TCCCTGAGCA 421 GAGGCAGCGG GTATAAAGAA ATATGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 481 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 541 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC TCACCTTCCC 601 TTAGCAATAC TTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 661 att