Transcript: Human XR_001747788.1

PREDICTED: Homo sapiens solute carrier family 37 member 2 (SLC37A2), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC37A2 (219855)
Length:
2822
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001747788.1
NBCI Gene record:
SLC37A2 (219855)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001747788.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414609 TCGATGTTGGTGGCATCATAG pLKO_005 1320 3UTR 100% 10.800 15.120 N SLC37A2 n/a
2 TRCN0000043324 CCGGTTAGTATACAAAGAGAT pLKO.1 1649 3UTR 100% 4.950 6.930 N SLC37A2 n/a
3 TRCN0000043325 GCTGCTGACCTTCCTAATTTA pLKO.1 379 3UTR 100% 15.000 10.500 N SLC37A2 n/a
4 TRCN0000420726 TCGCCAATGTGGCTCACTTTA pLKO_005 1266 3UTR 100% 13.200 9.240 N SLC37A2 n/a
5 TRCN0000416800 CATCGTGCCTGGCATCATTAC pLKO_005 934 3UTR 100% 10.800 7.560 N SLC37A2 n/a
6 TRCN0000043327 GAGCAGATCAAACCCATCAAT pLKO.1 467 3UTR 100% 5.625 3.938 N SLC37A2 n/a
7 TRCN0000043323 CCATTTGACAAGGACAACTAT pLKO.1 530 3UTR 100% 5.625 3.375 N SLC37A2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001747788.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09846 pDONR223 100% 48.8% None (many diffs) n/a
2 ccsbBroad304_09846 pLX_304 0% 48.8% V5 (many diffs) n/a
3 TRCN0000471332 AGCCGGGCGATTCTGTATCCGTGA pLX_317 26.9% 48.8% V5 (many diffs) n/a
4 ccsbBroadEn_13408 pDONR223 100% 13.3% None 1_1340del;1460T>C;1719_2822del n/a
5 ccsbBroad304_13408 pLX_304 0% 13.3% V5 1_1340del;1460T>C;1719_2822del n/a
6 TRCN0000471487 CTCACCTTCCCTTAGCAATACTTT pLX_317 100% 13.3% V5 1_1340del;1460T>C;1719_2822del n/a
Download CSV