Construct: ORF TRCN0000471535

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008431.1_s317c1
Derived from:
ccsbBroadEn_04144
DNA Barcode:
GCTGATATCACACAGGAATAAGCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC134 (79879)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471535
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79879 CCDC134 coiled-coil domain containi... NM_024821.4 100% 100%
2 human 79879 CCDC134 coiled-coil domain containi... XM_005261748.3 100% 100%
3 human 79879 CCDC134 coiled-coil domain containi... NM_001304797.1 50.6% 50.6% 223_224ins339
4 mouse 76457 Ccdc134 coiled-coil domain containi... NM_172428.2 87.6% 89.5% (many diffs)
5 mouse 76457 Ccdc134 coiled-coil domain containi... NM_001326588.1 74.9% 79% (many diffs)
6 mouse 76457 Ccdc134 coiled-coil domain containi... XM_006521526.2 68.9% 61.5% (many diffs)
7 mouse 76457 Ccdc134 coiled-coil domain containi... NR_137170.1 26% (many diffs)
8 mouse 76457 Ccdc134 coiled-coil domain containi... XR_001781575.1 16.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
753
ORF length:
687
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ccttcttcaa ttcctggcct tcctctttgt cctgcttttg tctgggatgg
121gagccacagg caccttgagg acctccctgg acccaagcct ggagatctac aagaagatgt
181ttgaggtgaa gcggcgggag cagctgttgg cactgaagaa cctggcacag ctgaacgaca
241tccaccagca gtacaagatc cttgatgtca tgctcaaggg gctctttaag gtgctggagg
301actcccggac agtgctcacc gctgctgatg tgctcccaga tgggcccttc ccccaggacg
361agaagctgaa ggatgctttc tcccacgtgg tggagaacac ggccTTCTTC GGCGATGTGG
421TGCTGCGCTT CCCGAGGATT GTGCACTATT ACTTTGACCA CAACTCCAAC TGGAACCTCC
481TCATCCGCTG GGGTATCAGT TTCTGCAACC AGACAGGCGT CTTCAACCAG GGGCCCCACT
541CGCCCATCCT CAGCCTGATG GCCCAGGAGC TGGGGATCAG TGAGAAAGAC TCCAACTTCC
601AGAACCCATT TAAAATCGAC CGCACAGAGT TCATTCCCAG CACTGACCCT TTCCAGAAGG
661CCCTGAGAGA AGAAGAGAAA CGCCGAAAGA AAGAGGAGAA GCGGAAGGAG ATCCGAAAAG
721GCCCAAGGAT CTCCAGATCC CAGTCTGAGT TATACCCAAC TTTCTTGTAC AAAGTGGTTG
781ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
841GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGC
901TGATATCACA CAGGAATAAG CGACGCGTTA AGTCgacaat caacctctgg attacaaaat
961ttgtgaaaga tt

Download FASTA (ORF) (Full)