Construct: ORF TRCN0000471540

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011968.1_s317c1
Derived from:
ccsbBroadEn_06902
DNA Barcode:
CCGAACCCCTCTTCAGATAGATTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RRM1 (6240)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471540
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6240 RRM1 ribonucleotide reductase ca... NM_001033.5 99.8% 100% 850C>A;2223A>G;2232G>A
2 human 6240 RRM1 ribonucleotide reductase ca... NM_001318064.1 87.6% 87.7% (many diffs)
3 human 6240 RRM1 ribonucleotide reductase ca... NM_001330193.1 71.8% 71.9% (many diffs)
4 human 6240 RRM1 ribonucleotide reductase ca... NM_001318065.1 57.2% 57.3% 0_1ins1014;1209A>G;1218G>A
5 mouse 20133 Rrm1 ribonucleotide reductase M1 NM_009103.3 90.1% 97.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2442
ORF length:
2376
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca tgtgatcaag cgagatggcc gccaagaacg agtcatgttt gacaaaatta
121catctcgaat ccagaagctt tgttatggac tcaatatgga ttttgttgat cctgctcaga
181tcaccatgaa agtaatccaa ggcttgtaca gtggggtcac cacagtggaa ctagatactt
241tggctgctga aacagctgca accttgacta ctaagcaccc tgactatgct atcctggcag
301ccaggatcgc tgtctctaac ttgcacaaag aaacaaagaa agtgttcagt gatgtgatgg
361aagacctcta taactacata aatccacata atggcaaaca ctctcccatg gtggccaagt
421caacattgga tattgttctg gccaataaag atcgcctgaa ttctgctatt atctatgacc
481gagatttctc ttacaattac ttcggcttta agacgctaga gcggtcttat ttgttgaaga
541tcaatggaaa agtggctgaa agaccacaac atatgttgat gagagtatct gttgggatcc
601acaaagaaga cattgatgca gcaattgaaa catataatct tctttctgag aggtggttta
661ctcatgcttc gcccactctc ttcaatgctg gtaccaaccg cccacaactt tctagctgtt
721ttcttctgag tatgaaagat gacagcattg aaggcattta tgacactcta aagcaatgtg
781cattgatttc taagtctgct ggaggaattg gtgttgctgt gagttgtatt cgggctactg
841gcagctacat tgctgggact aatggcaatt ccaatggcct tgtaccgatg ctgagagtat
901ataacaacac agctagatat gtggatcaag gtgggaacaa gcgtcctggg gcatttgcta
961tttacctgga gccttggcat ttagacatct ttgaattcct tgatttaaag aagaacacag
1021gaaaggaaga gcagcgtgcc agagatcttt tctttgctct ttggattccg gatctcttca
1081tgaaacgagt ggagactaat caggactggt ctttgatgtg tccaaatgag tgtcctggtc
1141tggatgaggt ttggggagag gaatttgaga aactatatgc aagttatgag aaacaaggtc
1201gtgtccgcaa agttgtaaaa gctcagcagc tttggtatgc catcattgag tctcagacgg
1261aaacaggcac cccgtatatg ctctacaaag attcctgtaa tcgaaagagc aaccagcaga
1321acctgggaac catcaaatgc agcaacctgt gcacagaaat agtggagtac accagcaaag
1381atgaggttgc tgtttgtaat ttggcttccc tggccctgaa tatgtatgtc acatcagaac
1441acacatacga ctttaagaag ttggctgaag tcactaaagt cgttgtccga aacttgaata
1501aaattattga tataaactac tatcctgtac cagaggcatg cctatcaaat aaacgccatc
1561gccccattgg aattggggta caaggtctgg cagatgcttt tatcctgatg agataccctt
1621ttgagagtgc agaagcccag ttactgaata agcagatctt tgaaactatt tattatggtg
1681ctctggaagc cagctgtgac cttgccaagg agcagggccc atacgaaacc tatgagggct
1741ctccagttag caaaggaatt cttcagtatg atatgtggaa tgttactcct acagacctat
1801gggactggaa ggttctcaag gagaagattg caaagtatgg tataagaaac agtttactta
1861ttgccccgat gcctacagct tccactgctc agatcctggg gaataatgag tccattgaac
1921cttacaccag caacatctat actcgcagag tcttgtcagg agaatttcag attgtaaatc
1981ctcacttatt gaaagatctt accgagcggg gccTATGGCA TGAAGAGATG AAAAACCAGA
2041TTATTGCATG CAATGGCTCT ATTCAGAGCA TACCAGAAAT TCCTGATGAC CTGAAGCAAC
2101TTTATAAAAC TGTGTGGGAA ATCTCTCAGA AAACTGTTCT CAAGATGGCA GCTGAGAGAG
2161GTGCTTTCAT TGATCAAAGC CAATCTTTGA ACATCCACAT TGCTGAGCCT AACTATGGCA
2221AACTCACTAG TATGCACTTC TACGGCTGGA AGCAGGGTTT GAAGACTGGG ATGTATTATT
2281TAAGGACGAG ACCAGCAGCT AATCCAATCC AGTTCACTCT AAATAAGGAG AAGCTAAAAG
2341ATAAAGAAAA GGTATCAAAA GAGGAAGAAG AGAAGGAGAG GAACACAGCA GCCATGGTGT
2401GCTCTTTGGA GAATAGAGAT GAATGTCTGA TGTGTGGATC CTGCCCAACT TTCTTGTACA
2461AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2521AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2581AGGACGACCG AACCCCTCTT CAGATAGATT TACGCGTTAA GTCgacaatc aacctctgga
2641ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)