Transcript: Human NM_001033.5

Homo sapiens ribonucleotide reductase catalytic subunit M1 (RRM1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-26
Taxon:
Homo sapiens (human)
Gene:
RRM1 (6240)
Length:
3142
CDS:
215..2593

Additional Resources:

NCBI RefSeq record:
NM_001033.5
NBCI Gene record:
RRM1 (6240)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001033.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000038968 CCAATCCAGTTCACTCTAAAT pLKO.1 2453 CDS 100% 13.200 10.560 N RRM1 n/a
2 TRCN0000300203 CCAATCCAGTTCACTCTAAAT pLKO_005 2453 CDS 100% 13.200 10.560 N RRM1 n/a
3 TRCN0000038967 CCTGCTCAGATCACCATGAAA pLKO.1 320 CDS 100% 5.625 3.938 N RRM1 n/a
4 TRCN0000038964 CCCACAACTTTCTAGCTGTTT pLKO.1 850 CDS 100% 4.950 3.465 N RRM1 n/a
5 TRCN0000300201 CCCACAACTTTCTAGCTGTTT pLKO_005 850 CDS 100% 4.950 3.465 N RRM1 n/a
6 TRCN0000038965 GCTGTCTCTAACTTGCACAAA pLKO.1 458 CDS 100% 4.950 3.465 N RRM1 n/a
7 TRCN0000300202 GCTGTCTCTAACTTGCACAAA pLKO_005 458 CDS 100% 4.950 3.465 N RRM1 n/a
8 TRCN0000038966 GCTGAGCCTAACTATGGCAAA pLKO.1 2351 CDS 100% 4.050 2.835 N RRM1 n/a
9 TRCN0000300204 GCTGAGCCTAACTATGGCAAA pLKO_005 2351 CDS 100% 4.050 2.835 N RRM1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001033.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06902 pDONR223 100% 99.8% 100% None 850C>A;2223A>G;2232G>A n/a
2 ccsbBroad304_06902 pLX_304 0% 99.8% 100% V5 850C>A;2223A>G;2232G>A n/a
3 TRCN0000471540 CCGAACCCCTCTTCAGATAGATTT pLX_317 18.3% 99.8% 100% V5 850C>A;2223A>G;2232G>A n/a
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