Construct: ORF TRCN0000471684
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008408.1_s317c1
- Derived from:
- ccsbBroadEn_13803
- DNA Barcode:
- AGCCTAGGTCAAATATTTTAATCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471684
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22981 | NINL | ninein like | XM_011529198.1 | 8.5% | 7.2% | (many diffs) |
| 2 | human | 22981 | NINL | ninein like | XM_011529197.2 | 8.3% | 7.1% | (many diffs) |
| 3 | human | 22981 | NINL | ninein like | XM_017027735.1 | 8.3% | 7.1% | (many diffs) |
| 4 | human | 22981 | NINL | ninein like | XM_017027734.1 | 7.7% | 6.5% | (many diffs) |
| 5 | human | 22981 | NINL | ninein like | XM_011529195.3 | 7.1% | 6.1% | (many diffs) |
| 6 | human | 22981 | NINL | ninein like | XM_011529194.2 | 6.7% | 5.7% | (many diffs) |
| 7 | human | 22981 | NINL | ninein like | NM_001318226.1 | 6.6% | 5.7% | (many diffs) |
| 8 | human | 22981 | NINL | ninein like | XM_011529193.1 | 6.6% | 5.6% | (many diffs) |
| 9 | human | 22981 | NINL | ninein like | XM_011529192.2 | 6.3% | 5.4% | (many diffs) |
| 10 | human | 22981 | NINL | ninein like | XM_017027733.1 | 5.3% | 4.5% | (many diffs) |
| 11 | human | 22981 | NINL | ninein like | XM_011529191.1 | 5.3% | 4.5% | (many diffs) |
| 12 | human | 22981 | NINL | ninein like | NM_025176.6 | 5% | 4.2% | (many diffs) |
| 13 | human | 22981 | NINL | ninein like | XM_011529190.1 | 4.9% | 4.2% | (many diffs) |
| 14 | human | 22981 | NINL | ninein like | XM_011529188.1 | 4.7% | 4% | (many diffs) |
| 15 | human | 22981 | NINL | ninein like | XM_011529189.1 | 4.7% | 4% | (many diffs) |
| 16 | human | 22981 | NINL | ninein like | XM_011529187.2 | 4.7% | 4% | (many diffs) |
| 17 | human | 22981 | NINL | ninein like | XM_011529186.2 | 4.7% | 4% | (many diffs) |
| 18 | human | 22981 | NINL | ninein like | XM_017027732.1 | 4.7% | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 220
- ORF end:
- 442
- ORF length:
- 222
- Sequence:
-
1 GGTTTTATGC GATGGAGTTT CCCCACACTG AGTGGGTGGA GACTGAAGTT AGGCCAGCTT 61 GGCACTTGAT GTAATTCTCC TTGGAATTTG CCCTTTTTGA GTTTGGATCT TGGTTCATTC 121 TCAAGCCTCA GACAGTGGTT CAAAGTTTTT TTCTTCCATT TCAGGTGTCG TGAGGCTAGC 181 ATCGATTGAT CAACAAGTTT GTACAAAAAA GTTGGCACCA TGTTAACACA GAGCCTGGAG 241 GAGGTGGTTC GCAGTGGGCA GCAGCAGAGT GACCAAATCC AAAAACTTAG AGTTGAACTT 301 GAATGCCTGA ATCAGGAACA TCAGAGCCTG CAGCTGCCAT GGTCAGAGCT GACCCAGACC 361 CTTGAGGAAA GTCAAGACCA GGTGGGTGTG AGCGATGGCT GGAGGCACTG GGTCCAGTCC 421 CACCTGGGAG CAGCATCACC GTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG 481 CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT 541 GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAGC CTAGGTCAAA 601 TATTTTAATC GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat 661 t