Construct: ORF ccsbBroadEn_13803
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008408.1_s300c1, BRDN0000394532
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22981 | NINL | ninein like | XM_011529198.1 | 8.5% | 7.2% | (many diffs) |
| 2 | human | 22981 | NINL | ninein like | XM_011529197.2 | 8.3% | 7.1% | (many diffs) |
| 3 | human | 22981 | NINL | ninein like | XM_017027735.1 | 8.3% | 7.1% | (many diffs) |
| 4 | human | 22981 | NINL | ninein like | XM_017027734.1 | 7.7% | 6.5% | (many diffs) |
| 5 | human | 22981 | NINL | ninein like | XM_011529195.3 | 7.1% | 6.1% | (many diffs) |
| 6 | human | 22981 | NINL | ninein like | XM_011529194.2 | 6.7% | 5.7% | (many diffs) |
| 7 | human | 22981 | NINL | ninein like | NM_001318226.1 | 6.6% | 5.7% | (many diffs) |
| 8 | human | 22981 | NINL | ninein like | XM_011529193.1 | 6.6% | 5.6% | (many diffs) |
| 9 | human | 22981 | NINL | ninein like | XM_011529192.2 | 6.3% | 5.4% | (many diffs) |
| 10 | human | 22981 | NINL | ninein like | XM_017027733.1 | 5.3% | 4.5% | (many diffs) |
| 11 | human | 22981 | NINL | ninein like | XM_011529191.1 | 5.3% | 4.5% | (many diffs) |
| 12 | human | 22981 | NINL | ninein like | NM_025176.6 | 5% | 4.2% | (many diffs) |
| 13 | human | 22981 | NINL | ninein like | XM_011529190.1 | 4.9% | 4.2% | (many diffs) |
| 14 | human | 22981 | NINL | ninein like | XM_011529188.1 | 4.7% | 4% | (many diffs) |
| 15 | human | 22981 | NINL | ninein like | XM_011529189.1 | 4.7% | 4% | (many diffs) |
| 16 | human | 22981 | NINL | ninein like | XM_011529187.2 | 4.7% | 4% | (many diffs) |
| 17 | human | 22981 | NINL | ninein like | XM_011529186.2 | 4.7% | 4% | (many diffs) |
| 18 | human | 22981 | NINL | ninein like | XM_017027732.1 | 4.7% | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 291
- ORF length:
- 222
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTAACACAG AGCCTGGAGG AGGTGGTTCG CAGTGGGCAG CAGCAGAGTG 121 ACCAAATCCA AAAACTTAGA GTTGAACTTG AATGCCTGAA TCAGGAACAT CAGAGCCTGC 181 AGCTGCCATG GTCAGAGCTG ACCCAGACCC TTGAGGAAAG TCAAGACCAG GTGGGTGTGA 241 GCGATGGCTG GAGGCACTGG GTCCAGTCCC ACCTGGGAGC AGCATCACCG TTGCCAACTT 301 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac