Construct: ORF TRCN0000471725

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001146.1_s317c1
Derived from:
ccsbBroadEn_13304
DNA Barcode:
ATTGACACGCCAGGCTATGCAAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC39B (158219)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471725
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 158219 TTC39B tetratricopeptide repeat do... NM_001168342.2 37.6% 36% (many diffs)
2 human 158219 TTC39B tetratricopeptide repeat do... XM_024447425.1 37.6% 36% (many diffs)
3 human 158219 TTC39B tetratricopeptide repeat do... XM_011517732.2 33.2% 31.8% (many diffs)
4 human 158219 TTC39B tetratricopeptide repeat do... XM_017014311.1 33.2% 31.8% (many diffs)
5 human 158219 TTC39B tetratricopeptide repeat do... XM_017014312.1 33.2% 31.8% (many diffs)
6 human 158219 TTC39B tetratricopeptide repeat do... XM_024447422.1 33.2% 31.8% (many diffs)
7 human 158219 TTC39B tetratricopeptide repeat do... XM_024447423.1 33.2% 31.8% (many diffs)
8 human 158219 TTC39B tetratricopeptide repeat do... XM_024447424.1 33.2% 31.8% (many diffs)
9 human 158219 TTC39B tetratricopeptide repeat do... NM_001168341.1 31.7% 30.4% (many diffs)
10 human 158219 TTC39B tetratricopeptide repeat do... XM_017014310.1 30.2% 28.9% (many diffs)
11 human 158219 TTC39B tetratricopeptide repeat do... NM_001168340.1 29.1% 27.9% (many diffs)
12 human 158219 TTC39B tetratricopeptide repeat do... NM_001168339.1 28.6% 27.4% (many diffs)
13 human 158219 TTC39B tetratricopeptide repeat do... NM_152574.2 28.5% 27.3% (many diffs)
14 human 158219 TTC39B tetratricopeptide repeat do... XR_001746190.1 8.5% 1_1608del;2206_7023del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
663
ORF length:
597
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac ctttctctgg ggctgggctg gggttcttca cagacaggtg gacagcttga
121agcagagaat tgccgggaaa tctatcccta ctgagaagtt tgctgtgagg aaggctcggc
181gttactccgc ctccttacct gcacctgtga agctcatctt acctgccctg gaaatgatgt
241atgtctggaa tggtttttca atagtgagca aaagaaaaga cctttctgaa aatctgttag
301taactgttga aaaagctgag gcagctttac aaagtcaaaa ttttaacagc ttctctgtgg
361atgatgagtg cttagtgaag ttacttaaag gatgttgcct caagaactta cagcggccct
421tgcaagctga actatgttac aatcatgttg tggaaagtga aaagctactg aagtatgacc
481actacctagt gccgttcact ctatttgaat tggcatcttt gtataaaagc caggGGGAAA
541TTGACAAGGC CATAAAGTTC CTAGAAACTG CAAGGAACAA CTACAAAGAT TACTCCCTGG
601AGTCCAGACT ACACTTCAGA ATTCAGGCAG CTCTTCACCT CTGGAGAAAA CCTTCCTCAG
661ATTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
721TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
781GGCTTTATAT ATCTTGTGGA AAGGACGAAT TGACACGCCA GGCTATGCAA GAACGCGTTA
841AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)