Transcript: Human XR_001746190.1

PREDICTED: Homo sapiens tetratricopeptide repeat domain 39B (TTC39B), transcript variant X8, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TTC39B (158219)
Length:
7023
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001746190.1
NBCI Gene record:
TTC39B (158219)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001746190.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148327 CATCGGCATCTGCTATAGATT pLKO.1 2244 3UTR 100% 5.625 7.875 N TTC39B n/a
2 TRCN0000150208 GCAAGGAACAACTACAAAGAT pLKO.1 2113 3UTR 100% 5.625 7.875 N TTC39B n/a
3 TRCN0000149065 GCTAAGGAGAGTATGTACCAT pLKO.1 521 3UTR 100% 3.000 4.200 N TTC39B n/a
4 TRCN0000146417 CGGCATCTGCTATAGATTCAA pLKO.1 2247 3UTR 100% 5.625 3.938 N TTC39B n/a
5 TRCN0000148825 CTGAAGTATGACCACTACCTA pLKO.1 2011 3UTR 100% 3.000 2.100 N TTC39B n/a
6 TRCN0000147265 GAATGGAAACAGTTTCACCAT pLKO.1 1310 3UTR 100% 2.640 1.848 N TTC39B n/a
7 TRCN0000148681 CCAGCAAGGATTATCAGACTA pLKO.1 983 3UTR 100% 4.950 2.970 N TTC39B n/a
8 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 6714 3UTR 100% 5.625 2.813 Y KLHL30 n/a
9 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 6714 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001746190.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14414 pDONR223 100% 26.1% None (many diffs) n/a
2 ccsbBroad304_14414 pLX_304 0% 26.1% V5 (many diffs) n/a
3 ccsbBroadEn_13304 pDONR223 100% 8.5% None 1_1608del;2206_7023del n/a
4 ccsbBroad304_13304 pLX_304 0% 8.5% V5 1_1608del;2206_7023del n/a
5 TRCN0000471725 ATTGACACGCCAGGCTATGCAAGA pLX_317 22.5% 8.5% V5 1_1608del;2206_7023del n/a
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