Construct: ORF TRCN0000471832
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000408.1_s317c1
- Derived from:
- ccsbBroadEn_15950
- DNA Barcode:
- AGCAGACGTTGCATGCGCAATTCA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- RANBP10 (57610)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471832
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57610 | RANBP10 | RAN binding protein 10 | NM_020850.3 | 96.5% | 77.4% | (many diffs) |
| 2 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_005256070.2 | 92.1% | 73.8% | (many diffs) |
| 3 | human | 57610 | RANBP10 | RAN binding protein 10 | NM_001320239.2 | 83.8% | 65.4% | (many diffs) |
| 4 | human | 57610 | RANBP10 | RAN binding protein 10 | NM_001320238.2 | 74.6% | 56.1% | (many diffs) |
| 5 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_005256072.2 | 72.4% | 53.7% | (many diffs) |
| 6 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_017023507.2 | 67.7% | 45.9% | (many diffs) |
| 7 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_006721238.4 | 63% | 38.8% | (many diffs) |
| 8 | human | 57610 | RANBP10 | RAN binding protein 10 | NM_001320240.2 | 60.6% | 41% | (many diffs) |
| 9 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_017023509.2 | 60.6% | 41% | (many diffs) |
| 10 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_011523247.3 | 57.9% | 39.1% | (many diffs) |
| 11 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_017023508.1 | 57.9% | 39.1% | (many diffs) |
| 12 | human | 57610 | RANBP10 | RAN binding protein 10 | XM_011523245.2 | 53.4% | 34.5% | (many diffs) |
| 13 | mouse | 74334 | Ranbp10 | RAN binding protein 10 | NM_145824.4 | 85% | 72.2% | (many diffs) |
| 14 | mouse | 74334 | Ranbp10 | RAN binding protein 10 | XM_006531426.1 | 55.9% | 39.7% | (many diffs) |
| 15 | mouse | 74334 | Ranbp10 | RAN binding protein 10 | XM_011248526.1 | 55.9% | 39.7% | (many diffs) |
| 16 | mouse | 74334 | Ranbp10 | RAN binding protein 10 | XM_006531428.3 | 51.5% | 35.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1563
- ORF length:
- 1494
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcggcagcg acggcagacc cgggagctgg gaacccgcag cctggggact 121 cctccggcgg gggcgctggg ggcgggctgc cgtcccctgg ggagcaggag ctgagccggc 181 gcttgcagcg cctgtatccc gcggtcaacc agcaagagac tccgctgccg cgctcctgga 241 gccccaagga caaatacaac tacattggtc tctcccaggg caacctccgc gtccactaca 301 aaggtcatgg caaaaatcac aaagatgcgg cctcagtgcg tgccacccac cccatacctg 361 ctgcctgtgg catttattac tttgaagtga agattgtcag caaaggaaga gatggttaca 421 tgggaatagg actctcggct caaggcgtca acatgaacag acttcctggt tgggacaaac 481 attcctatgg ttaccatggt gatgatgggc attcgttctg ctcctcgggg actggccagc 541 cctatggtcc cacattcacc acaggagacg tgatcggctg ctgtgtcaac ctcatcaatg 601 gcacctgctt ctacaccaag aatggccaca gccttggtat agccttcaca gacctcccgg 661 ccaacctcta ccccaccgta ggcctgcaga cacctgggga gattgtggac gccaactttg 721 ggcagcagcc cttcctgttt gacattgagg actacatgcg ggagtggcgt gccaaggtcc 781 agggcacggt ccactgcttc cccatcagtg cccggcttgg cgagtggcag gcagtgctgc 841 agaacatggt ttcatcttac ctcgtgcatc atgggtattg tgccacagcc acggcttttg 901 ctcgaatgac tgaaaccccg attcaggaag aacaggcgtc cataaagaac agacaaaaga 961 tccagaagct ggtgctggag ggccgtgtgg gcgaggccat cgagaccacc cagcgcttct 1021 acccagggct gctggagcac aaccccaacc tcctcttcat gctcaagtgc cggcagtttg 1081 tggagatggt gaatgggacg gacagtgagg tccgaagttt gagctcccga agccccaagt 1141 cccaggacag ctaccctggc tcccccagcc tcagtccccg acatggcccc agtagttccc 1201 acatgcacaa cacaggagca gacagtccca gctgtagcaa tggcgtcgcg tccaccaaga 1261 gcaaacagaa ccacagtaaa taccctgcac ccagctcctc atcctcgtcc tcctcctcct 1321 cctcgtcctc ttccccatcc tccgtcaatt actccgagtc caactcaaca gactccacca 1381 agtcccagca ccacagcagt accagtaacc aggagaccag cgacagtgag atggagatgg 1441 aggcagagca ctaccccaac ggtgtgctag gaagcatgtc cacacgcatt gttaatggtg 1501 cctacaagca tgaggacctT CAGACAGTGG TTCAAAGTTT TTTTCTTCCA TTTCAGGTGT 1561 CGTGAGGCTA GCATCGATTG ATCAACAAGT TTGTACAAAA AAGTTGGCAC CATGGCGGCA 1621 GCTCTGCGGG GGCAACCAGG CTGCCACAGA AAGGATCATT CTGTTTGGCC GCGAGTTGCA 1681 GGCATTGAGT GAGCAGTTGG GCCGGGAGTA CGGCAAGAAT TTGGCCCACA CAGAGATGCT 1741 GCAGGATGCC TTCAGCCTGC TGGCATACTC AGACCCCTGG AGCTGCCCAG TTGGCCAGCA 1801 GCTTGACCCC ATCCAGAGGG AACCTGTGTG TGCTGCCCTC AACAGCGCCA TTTTAGAGTC 1861 CCAGAACCTG CCAAAGCAGC CCCCTCTGAT GCTCGCCCTG GGCCAGGCAT CTGAGTGTCT 1921 CCGGCTCATG GCCCGAGCAG GCCTGGGTTC TTGCTCCTTT GCCAGAGTTG ATGACTACTT 1981 GCACTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT 2041 CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC 2101 TTGGCTTTAT ATATCTTGTG GAAAGGACGA AGCAGACGTT GCATGCGCAA TTCAACGCGT 2161 TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt