Construct: ORF TRCN0000471835

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000651.1_s317c1
Derived from:
ccsbBroadEn_10954
DNA Barcode:
AACACCGTATATATTATCATCCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LY9 (4063)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471835
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4063 LY9 lymphocyte antigen 9 XM_017001304.1 78.3% 75.7% (many diffs)
2 human 4063 LY9 lymphocyte antigen 9 NM_001261457.2 71.5% 71.3% (many diffs)
3 human 4063 LY9 lymphocyte antigen 9 XM_011509556.1 66% 65.8% (many diffs)
4 human 4063 LY9 lymphocyte antigen 9 XM_011509560.1 63.7% 63.5% (many diffs)
5 human 4063 LY9 lymphocyte antigen 9 XM_017001302.1 63.6% 61.6% (many diffs)
6 human 4063 LY9 lymphocyte antigen 9 NM_002348.4 61.6% 61.5% (many diffs)
7 human 4063 LY9 lymphocyte antigen 9 XM_017001303.1 61.4% 59.3% (many diffs)
8 human 4063 LY9 lymphocyte antigen 9 XM_017001301.1 59.5% 57.6% (many diffs)
9 human 4063 LY9 lymphocyte antigen 9 NM_001261456.2 59.5% 59.3% (many diffs)
10 human 4063 LY9 lymphocyte antigen 9 XM_017001300.1 58.3% 56.4% (many diffs)
11 human 4063 LY9 lymphocyte antigen 9 XM_011509549.1 57.5% 57.4% (many diffs)
12 human 4063 LY9 lymphocyte antigen 9 XM_011509548.1 57.4% 57.3% (many diffs)
13 human 4063 LY9 lymphocyte antigen 9 XM_017001297.1 55.6% 53.8% (many diffs)
14 human 4063 LY9 lymphocyte antigen 9 XM_017001299.1 55.5% 55.4% (many diffs)
15 human 4063 LY9 lymphocyte antigen 9 XM_011509550.1 54.4% 54.6% (many diffs)
16 human 4063 LY9 lymphocyte antigen 9 XM_011509552.1 54.2% 54.1% (many diffs)
17 human 4063 LY9 lymphocyte antigen 9 XM_017001298.1 53.6% 51.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1284
ORF length:
1215
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaagtctgtg aaggtgtctg agaacttctc ctgtaacatc actctaatgt
121gctccgtgaa gggggcagag aaaagtgttc tgtacagctg gaccccaagg gaaccccatg
181cttctgagtc caatggaggc tccattctta ccgtctccgg aacaccatgt gacccagacc
241tgccatacat ctgcacagcc cagaaccccg tcagccagag aagctccctc cctgtccatg
301ttgggcagtt ctgtacagat ccaggagcct ccagaggagg aacaacgggg gagactgtgg
361taggggtcct gggagagcca gtcaccctgc cacttgcact cccagcctgc cgggacacag
421agaaggttgt ctggttgttt aacacatcca tcattagcaa agagagggaa gaagcagcaa
481cggcagatcc actcattaaa tccagggatc cttacaagaa cagggtgtgg gtctccagcc
541aggactgctc cctgaagatc agccagctga agatagagga cgccggcccc taccatgcct
601acgtgtgctc agaggcctcc agcgtcacca gcatgacaca tgtcaccctg ctcatctacc
661gacctgagag aaacacaaag ctttggattg ggttgttcct gatggtttgc cttctgtgcg
721ttgggatctt cagctggtgc atttggaagc gaaaaggacg gtgttcagtc ccagccttct
781gttccagcca agctgaggcc ccagcggata caccagaacc cacagctggc cacacgctat
841actctgtgct ctcccaagga tatgagaagc tggacactcc ccTCAGGCCT GCCAGGCAAC
901AGCCTACACC CACCTCAGAC AGCAGCTCTG ACAGCAACCT CACAACTGAG GAGGATGAGG
961ACAGGCCTGA GGTGCACAAG CCCATCAGTG GAAGATATGA GGTGTTTGAC CAGGTCACTC
1021AGGAGGGCGC TGGACATGAC CCAGCCCCTG AGGGCCAAGC AGACTATGAT CCCGTCACTC
1081CATATGTCAC GGAAGTTGAG TCTGTGGTTG GAGAGAACAC CGTGTATGCA CAAGTGTTCA
1141ACTTACAGGG AAAGACCCCA GTTTCTCAGA AGGAAGAGAG CTCAGCCACA ATCTACTGCT
1201CCATACGGAA ACCTCAGGTG GTGCCACCAC CACAACAGAA TGATCTTGAG ATTCCTGAAA
1261GTCCTACCTA TGAAAATTTC ACCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1321AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1381TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA ACACCGTATA
1441TATTATCATC CCTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1501att

Download FASTA (ORF) (Full)

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