Construct: ORF TRCN0000471937

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015757.1_s317c1
Derived from:
ccsbBroadEn_08983
DNA Barcode:
ACCCCCAACCTTGAGAAGCTACAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMC7 (79905)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471937
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79905 TMC7 transmembrane channel like 7 NM_024847.4 99.9% 99.8% 175C>T;1941G>A
2 human 79905 TMC7 transmembrane channel like 7 NM_001300732.1 93.2% 92.8% (many diffs)
3 human 79905 TMC7 transmembrane channel like 7 NM_001324265.1 92.7% 92.6% 175C>T;1870_1871ins156
4 human 79905 TMC7 transmembrane channel like 7 NM_001160364.2 84.7% 84.7% 0_1ins330;1611G>A
5 human 79905 TMC7 transmembrane channel like 7 NM_001324263.1 52.6% 52.6% 0_1ins1026;915G>A
6 human 79905 TMC7 transmembrane channel like 7 NM_001324268.1 52.6% 52.6% 0_1ins1026;915G>A
7 human 79905 TMC7 transmembrane channel like 7 NR_136733.1 45.4% (many diffs)
8 mouse 209760 Tmc7 transmembrane channel-like ... NM_172476.4 84.8% 90.3% (many diffs)
9 mouse 209760 Tmc7 transmembrane channel-like ... XM_006507550.3 72.9% 78.7% (many diffs)
10 mouse 209760 Tmc7 transmembrane channel-like ... XR_001785514.1 40.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2235
ORF length:
2169
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag cgagtccagc ggcagtgcgc tccagcccgg caggcccagc cggcagccgg
121cggtccatcc agagaacctc tctctagact ccagttgctt ctcttctcca cctgtgaact
181tcctccaaga attgccaagc taccggtcca ttgcacgtag gagaacgact gtccattcct
241gggacaagca aagcggaact ttgctaaagc caaccgactc ttacagctcc cagctggagg
301acagaatcgc tgaaaacctc agcagccatt ctcttcgaaa ttatgcactg aacatctctg
361agaagcggag actaagggac attcaagaga cacaaatgaa gtatctctcc gaatgggacc
421agtggaagcg gtatagcagc aagtcttgga agaggttcct agagaaggct cgagagatga
481cgacccacct ggagctgtgg cgggaggaca tccgcagcat agaagggaaa tttggcactg
541ggattcagtc ctatttctcc ttcttgagat tcctggtgtt gctgaatttg gtgatatttc
601tgatcatctt tatgctggtt ttgctcccag tcttactcac gaaatacaag atcaccaaca
661gcagcttcgt gctcattcct ttcaaagaca tggataaaca atgtacagtc tatccagtaa
721gcagttctgg actcatttac ttttacagtt atatcataga cttgctttct ggcactggtt
781tcctggagga aactagcctc ttttacggac attacaccat tgatggggtg aaatttcaga
841acttcaccta tgatctgccc ctggcgtatt tgttaagcac aatcgcctcc ctggccctga
901gccttctttg gatagtgaaa aggtcggtgg aaggattcaa aatcaacctg attcggagtg
961aggagcactt tcagagttac tgcaacaaga tatttgccgg ctgggacttc tgcatcacta
1021accgcagcat ggcggatctg aagcacagca gcttgcggta cgagctccga gcagatctgg
1081aggaagaaag aatgcggcag aaaatagcag aaaggacctc agaagaaaca atacgcattt
1141actctttgag actgtttttg aactgtattg ttctggctgt tttaggggca tgcttttatg
1201caatatacgt agcaactgtc ttctcgcaag agcacatgaa aaaggaaatc gacaagatgg
1261tttttggaga gaacctcttc atattgtatc taccgtctat tgtgatcacg ctggccaatt
1321ttatcacccc aatgatcttt gccaagatca tccgctatga ggattattct ccaggctttg
1381agatccgtct gacaatcctt aggtgtgtct ttatgcggct ggccaccata tgtgtcctgg
1441tgttcacgct gggctccaag atcacatcct gtgatgatga cacatgtgac ctttgcggct
1501acaaccagaa actctacccg tgctgggaga cccaagttgg gcaggaaatg tacaagctga
1561tgatcttcga cttcatcatc atcttggctg tgacactctt cgtggatttt cctagaaagc
1621tcctggtgac ctactgttcc tcttgcaagc tgattcagtg ctgggggcag caggagtttg
1681ccattcctga taacgtcctg gggatagttt acgggcaaac catctgctgg atcggagcct
1741ttttctcacc ccttctccct gcaattgcaa ccctgaaatt cattatcatc ttctatgtga
1801aagagtggag tctgctttac acctgcagac cctcccccag gccgttcaga gcatccaatt
1861ctaattTCTT CTTCCTGTTG GTGTTGTTGA TCGGGCTGTG TTTGGCAATA ATACCTCTGA
1921CAATCAGCAT ATCACGCATC CCTTCCTCGA AAGCCTGTGG GCCGTTCACC AACTTCAACA
1981CCACCTGGGA GGTCATCCCC AAGACAGTGA GCACCTTCCC CAGCTCGCTG CAGTCCTTCA
2041TCCATGGTGT CACATCCGAA GCCTTTGCAG TTCCTTTCTT CATGATTATT TGCCTCATCA
2101TGTTTTACTT CATTGCCTTA GCTGGAGCAC ACAAACGGGT GGTCATCCAG CTCCGAGAGC
2161AGCTATCCCT GGAAAGTCGT GACAAGTGCT ACCTAATCCA GAAACTAACA GAAGCCCAAA
2221GGGACATGAG GAACTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
2281CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
2341TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ACCCCCAACC TTGAGAAGCT
2401ACACACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)