Construct: ORF TRCN0000471963

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004543.1_s317c1
Derived from:
ccsbBroadEn_00506
DNA Barcode:
ACGCAATGGTGGATGTGTCTTCTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPB42 (2038)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471963
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2038 EPB42 erythrocyte membrane protei... NM_001114134.1 100% 100%
2 human 2038 EPB42 erythrocyte membrane protei... NM_000119.3 95.5% 95.5% 1_93del;97_98insGAC;99T>G
3 human 2038 EPB42 erythrocyte membrane protei... XM_011521349.2 95.5% 95.5% 1_93del;97_98insGAC;99T>G
4 human 2038 EPB42 erythrocyte membrane protei... XM_011521350.2 95.5% 95.5% 1_93del;97_98insGAC;99T>G
5 human 2038 EPB42 erythrocyte membrane protei... XM_011521351.2 95.5% 95.5% 1_93del;97_98insGAC;99T>G
6 human 2038 EPB42 erythrocyte membrane protei... XM_005254225.1 94.9% 94.9% 548_549ins105
7 human 2038 EPB42 erythrocyte membrane protei... XM_011521352.2 93.8% 93.8% (many diffs)
8 human 2038 EPB42 erythrocyte membrane protei... XM_011521353.2 90.6% 90.7% (many diffs)
9 human 2038 EPB42 erythrocyte membrane protei... XM_011521354.2 77.5% 77.5% 0_1ins465
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2142
ORF length:
2073
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggacaggcc ctgggtatca agagctgtga ctttcaggca gcaagaaaca
121atgaggagca ccacaccaag gccctcagct cccggcgcct ctttgtgagg agggggcagc
181ccttcaccat catcctgtac ttccgcgctc cagtccgtgc atttctgcct gccctgaaga
241aggtggccct cactgcacaa actggagagc agccttccaa gatcaacagg acccaagcca
301cattcccaat ttccagtctg ggggaccgaa agtggtggag tgcagtggtg gaggagagag
361atgcccagtc ctggaccatc tctgtgacca cacctgcgga cgctgtcatt ggccactact
421cgcttctgct gcaggtctca ggcaggaagc aactcctctt gggtcagttc acactgcttt
481ttaacccctg gaatagagag gatgctgtgt tcctgaagaa tgaggctcag cgcatggagt
541acttgttgaa ccagaatggt ctcatctacc tgggtacagc tgactgcatc caggcagagt
601cctgggactt tggccagttc gagggggatg tcattgacct cagcctgcgc ttgctgagca
661aggacaagca ggtagagaag tggagccagc cggtgcacgt ggcccgtgtg ttgggtgcct
721tgctgcattt tctcaaggag cagagggtcc tgcccacccc gcagacccag gccacccagg
781aaggggcctt gctgaacaag cgccggggca gcgtgcccat cctgcggcag tggctcaccg
841gccgaggccg acctgtgtat gatggccagg cctgggtgtt ggctgctgtt gcttgcacag
901tgctgcgatg cctgggaatc cctgcccgcg tggtgaccac gtttgcctca gcacagggca
961ccggtgggcg tcttctcata gatgaatact ataatgagga gggacttcag aacggagaag
1021gccagagagg cagaatctgg atcttccaga cttccacaga gtgctggatg acgcggcctg
1081ccttgcccca gggttatgat ggatggcaga ttctgcaccc aagtgctcct aatggaggtg
1141gagtcctggg gtcctgtgat ctggtgccgg tcagagcagt caaggagggg acgctggggc
1201tgaccccagc agtgtcagac ctttttgctg ccataaatgc ctcatgtgtg gtctggaagt
1261gctgtgagga tgggacactg gagttgactg actccaacac aaagtatgtt ggcaacaaca
1321tcagcaccaa gggtgtgggc agtgaccgct gcgaggacat cactcagaac tacaagtatc
1381ctgaagggtc tcttcaggaa aaagaggtgc tggagagagt cgagaaagag aaaatggaac
1441gtgagaaaga caacggcatc cgtcctccca gtctcgagac tgccagtcct ctgtacctgc
1501tcttgaaagc acccagctcc ctacccctga gaggggatgc ccagatctca gtgacgctgg
1561ttaatcacag tgagcaggag aaggcagtgc agctggcaat tggggtccag gctgtacact
1621acaacggtgt ccttgctgcc aagctctgga ggaagaagct gcacctcacg ctcagtgcca
1681acctggaaaa gataataacc atcggcctgt tcttctccaa ttttgagcga aacccacccg
1741agaacacctt ccttagactc accgccatgg caacacactc tgaatccaac cTTAGCTGCT
1801TTGCTCAGGA AGACATTGCC ATTTGTAGAC CACACCTTGC CATCAAGATG CCAGAGAAAG
1861CAGAGCAGTA TCAACCCCTC ACAGCCTCAG TCAGCCTCCA GAACTCCCTA GATGCCCCCA
1921TGGAGGACTG TGTGATCTCC ATCCTGGGAA GGGGGCTCAT TCACAGAGAG AGGAGCTACA
1981GATTCCGTTC AGTGTGGCCT GAAAACACCA TGTGTGCCAA GTTCCAGTTC ACGCCAACAC
2041ATGTGGGGCT CCAGAGACTC ACTGTGGAAG TGGACTGCAA CATGTTCCAG AACCTAACCA
2101ACTATAAAAG CGTCACCGTG GTAGCCCCTG AACTATCAGC TTTGCCAACT TTCTTGTACA
2161AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2221AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2281AGGACGAACG CAATGGTGGA TGTGTCTTCT GACGCGTTAA GTCgacaatc aacctctgga
2341ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)