Construct: ORF TRCN0000472015
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010417.1_s317c1
- Derived from:
- ccsbBroadEn_11310
- DNA Barcode:
- CGTCTTTAGAGGGCAAACCAGCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INPP4B (8821)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472015
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_017008796.1 | 5.6% | 5.6% | (many diffs) |
| 2 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_017008795.1 | 5.6% | 5.5% | (many diffs) |
| 3 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | NM_001101669.2 | 5.3% | 5.3% | (many diffs) |
| 4 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | NM_003866.3 | 5.3% | 5.3% | (many diffs) |
| 5 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_024454275.1 | 5.3% | 5.3% | (many diffs) |
| 6 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_017008794.1 | 5.3% | 5.2% | (many diffs) |
| 7 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | NM_001331040.1 | 5.2% | 5.2% | (many diffs) |
| 8 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_024454274.1 | 5.2% | 5.2% | (many diffs) |
| 9 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_011532391.2 | 5.2% | 5.1% | (many diffs) |
| 10 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XM_024454273.1 | 5.2% | 5.1% | (many diffs) |
| 11 | human | 8821 | INPP4B | inositol polyphosphate-4-ph... | XR_001741343.2 | 5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 285
- ORF end:
- 444
- ORF length:
- 159
- Sequence:
-
1 GGCGCCGTCC AGGCACCTCG ATTAGTTCTC GAGCTTTTGG AGTACGTCGT CTTTAGGTTG 61 GGGGGAGGGG TTTTATGCGA TGGAGTTTCC CCACACTGAG TGGGTGGAGA CTGAAGTTAG 121 GCCAGCTTGG CACTTGATGT AATTCTCCTT GGAATTTGCC CTTTTTGAGT TTGGATCTTG 181 GTTCATTCTC AAGCCTCAGA CAGTGGTTCA AAGTTTTTTT CTTCCATTTC AGGTGTCGTG 241 AGGCTAGCAT CGATTGATCA ACAAGTTTGT ACAAAAAAGT TGGCATGGAA ATTAAAGAGG 301 AAGGGGCATC AGAAGAAGGG CAGCACTTTC TTCCTACAGC CCAGGCCAAT GATCCCGGGG 361 ACTGTCAGTT CACAAGTATC CAGAAGACTC CAAATGAACC GCAGTTGGAA TTCATCCTTG 421 ATTTGAATCA AGAATTAAGA GATTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 481 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 541 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC GTCTTTAGAG 601 GGCAAACCAG CCTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 661 att