Construct: ORF TRCN0000472053

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015428.1_s317c1
Derived from:
ccsbBroadEn_15955
DNA Barcode:
GCGCGAGTGACTAACCTCTGGTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPBP1L1 (60313)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472053
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60313 GPBP1L1 GC-rich promoter binding pr... NM_021639.5 100% 100%
2 human 60313 GPBP1L1 GC-rich promoter binding pr... XM_024448806.1 100% 100%
3 human 60313 GPBP1L1 GC-rich promoter binding pr... XM_024448808.1 100% 100%
4 human 60313 GPBP1L1 GC-rich promoter binding pr... XM_024448809.1 100% 100%
5 human 60313 GPBP1L1 GC-rich promoter binding pr... XM_024448810.1 100% 100%
6 human 60313 GPBP1L1 GC-rich promoter binding pr... XM_017002019.2 88.8% 88.8% 885_886ins159
7 human 60313 GPBP1L1 GC-rich promoter binding pr... XR_002957285.1 39.2% 1_1228del;2112_2139del;2679_3625del
8 human 60313 GPBP1L1 GC-rich promoter binding pr... XR_001737358.2 38.8% 1_1264del;2148_2175del;2715_3661del
9 mouse 77110 Gpbp1l1 GC-rich promoter binding pr... NM_029868.2 87% 88.4% (many diffs)
10 mouse 77110 Gpbp1l1 GC-rich promoter binding pr... XM_006503485.3 87% 88.4% (many diffs)
11 mouse 77110 Gpbp1l1 GC-rich promoter binding pr... XM_017320452.1 87% 88.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1488
ORF length:
1422
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gcagcatgat tttgttcctg cttggctaaa tttctcaaca ccacagtcag
121ctaagtcacc tactgccacc ttcgaaaaac acggagagca cctacccaga ggagaaggta
181gatttggagt aagccgccgt cgacataatt cctctgatgg tttttttaac aatggtcccc
241tacgaactgc aggagattct tggcaccagc cctccctgtt ccgccatgat tctgtggact
301ctggtgtctc taagggagca tatgctggaa tcacagggaa cccatctggt tggcatagct
361cttcccgagg tcatgatggc atgagccaac gtagtggagg tggcacaggg aaccatcgcc
421attggaatgg cagcttccac tcccggaaag ggtgtgcttt tcaggaaaag ccacctatgg
481agattaggga agaaaagaaa gaagacaagg tggaaaagtt gcagtttgaa gaggaggact
541ttccttcctt gaatccagaa gctggcaaac agcatcagcc atgcagacct attgggacac
601cttctggagt atgggaaaac ccgcctagtg ccaagcaacc ctccaagatg ctagttatca
661aaaaagtttc caaagaggat cctgctgctg ccttctctgc tgcattcacc tcaccaggat
721ctcaccatgc aaatgggaac aaattgtcat ccgtggttcc aagtgtctat aagaacctgg
781ttcctaagcc tgtaccacct ccttccaagc ctaatgcatg gaaagctaac aggatggagc
841acaagtcagg atccctttcc tctagccggg agtctgcttt taccagtcca atctctgtta
901ccaaaccagt ggtactggct agtggtgcag cTCTGAGTTC TCCCAAAGAG AGTCCCTCCA
961GCACCACCCC TCCAATTGAG ATCAGCTCCT CTCGTCTGAC CAAGTTGACC CGCCGAACCA
1021CCGACAGGAA GAGTGAGTTC CTGAAAACTC TGAAGGATGA CCGGAATGGA GACTTCTCAG
1081AGAATAGAGA CTGTGACAAG CTGGAAGATT TGGAGGACAA CAGCACACCT GAACCAAAGG
1141AAAATGGGGA GGAAGGCTGT CATCAAAATG GTCTTGCCCT CCCTGTAGTG GAAGAAGGGG
1201AGGTTCTCTC ACACTCTCTA GAAGCAGAGC ACAGGTTATT GAAAGCTATG GGTTGGCAGG
1261AATATCCTGA AAATGATGAG AATTGCCTTC CCCTCACAGA GGATGAGCTC AAAGAGTTCC
1321ACATGAAGAC AGAGCAGCTG AGAAGAAATG GCTTTGGAAA GAATGGCTTC TTGCAGAGCC
1381GCAGTTCCAG TCTGTTCTCC CCTTGGAGAA GCACTTGCAA AGCAGAGTTT GAGGACTCAG
1441ACACCGAAAC CAGTAGCAGT GAAACATCAG ATGACGATGC CTGGAAGTAC CCAACTTTCT
1501TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
1561CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1621GTGGAAAGGA CGAGCGCGAG TGACTAACCT CTGGTAGACG CGTTAAGTCg acaatcaacc
1681tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)